snrnp200 (snrnp200,LOC107686403,LOC107602857,LOC107667532,LOC107600001)


Basic Information

Item Value
gene id snrnp200
gene name snrnp200,LOC107686403,LOC107602857,LOC107667532,LOC107600001
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 14707862 ~ 14722945 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247034.1
ATAACTGCGTTTTGAAACCGTCGTGCGTGTTTCAGACGTATGGTGCAGTTTCGGAGATAAAGAAAAAGAGACTTAACTTTTCAAAGTGTGTTATTATTGTAGTGTGCACGTAATTCGTGCGCACTGAGCCAGTTCTCGCTTAACTGGGAACATACATGAGTGCTGTGTAGTTTATTTACCCGTCTGTCTTTCCGCTAGCGCCGGCTGTGCTGGTTGATAAAGAAGATTTTCATTCTGAGGGCATTTACAGTAATAAGAAGTCATGGCGGATGTTACTGCGCGTAGTTTGCAGTATGAATACAAAGCGAACTCCAACTTGGTGTTGCAAGCGGACAGATCTCTGATCGACCGGACCCGCAGAGATGAGCCCACCGGAGAGGTGCTGTCTCTGGTCGGAAAACTGGAGGGAACAAAAATGGGAGACAGGAGTCAGAGAACCAAACCTCAGAtgctggaggagaggagagcaAAgagaagaaagagagacgaAGACAGACATGACATAAACAAGATGAAGGGCTTCACGTTGCTGTCTGAGGGGATCGATGAGATGGTGGGCATCGTATACAAGCCCAAGACCAAAGAGACGAGAGAAACGTATGAAATTCTTCTCAGCTTCATTCAGGCTGCCCTTGGAGATCAGCCCAGGGATATCCTTTGTGGAGCTGCAGATGAGGTGTTGGCTGTGCTGAAGAATGACAAGatgagagacaaagagaggaggagggaggTGGAGCAGTTGCTGGGGCCCACGGACGACACGCGTTACCACGTCCTGGTCAACCTGGGCAAGAAGATCTCTGACTACGGTGGAGACAAAGAGCTCCAAAATATGGATGATAACATTGATGAAACCTATGGAGTCAATGTGCAGTTTGAGTCTGATGAGGAGGAGGGCGATGAGGACCAGTATGGAGAGGTTCGGGATGAAGGCTCTGATGACAGCGAGGGAGAGGAGGCAGATGAGAGCAGCACCTTGACTGCTAATCTGGGAAACACAGGCGACGTGATGATGACCAAAAAGAAGGATCTTCACCCTCGAGACATCGATGCTTTCTGGCTCCAGCGACAGCTCAGCCGCTTCTACAATGATGCTATCGTGTCTCAGAAGAAAGCAGATGAGGTTTTGGAAATCCTTAAGACGGCCAGTGACGACAGAGAGTGTGAGAACCAGTTGGTGCTGCTTTTGGGCTTCAACACGTTTGACTTCATTAAGGTCCTCCGCCAGCACAGGCGAATGAtccTGTACTGCACAATGTTGGCCAGCGCCCAAAGTGAggctgagaaagagaaaatcaTGAACAAAATGGAAGCTGATCAGGATCTTTCCAAAGTTCTTTACCAGCTGCAGGAGACTGAGAAAGAGGACATCATCAGGGAGGAGCGATCTCGCCGGGAGAGAGTACGAAAGTCTCGTGTAGATGATCTGGAGTCTATGGACATCGATCATGGAGAGGCTGTGACCTCGAGGCAAGTACTAGATCTTGAAGACCTGGCCTTCTCTCAGGGCAGTCACTTCATGGCCAACAAGCGTTGTCAGCTGCCAGACGGCTCCTTCCGCAAACAGAGGAAGGGTTACGAGGAGGTCCATGTGCCTGCTCTCAAACCCAAACCCTTTGGTGATGAAGAGACACTGGTGGCTATTGAGAAGCTACCCAAATATGCCCAAGCTGGATTTGAAGGATTTAAAACCTTGAATCGCATACAGAGTAAACTCTTTAAAACCACAATGGAGACAGATGAAAACCTGCTGGTTTGTGCCCCAACGGGTGCTGGCAAAACCAATGTTGCTCTTATGGCAATGCTCAGAGAGATCGGAAAGCACATCAACATGGATGGCACCATCAATGTTGATGATTTTAAAATCATCTATATTGCTCCCATGCGCTCACTAGTACAGGAGATGGTGGGCAGCTTTGGGAAGCGTTTGGCTAGTTATGGCATAACTGTTTCTGAGCTGACCGGTGACCATCAGCTGTGTAAAGAGGAAATAAATGCCACCCAGATTATCGTGTGCACCCCAGAGAAATGGGACATCATCACCCGAAAAGGAGGAGAACGCACATATACGCAGCTTGTGCGCCTTATCATTATTGATGAGATCCACTTGCTGCATGATGATCGTGGCCCCGTTCTGGAGTCCCTGATTGCTCGAACTATCCGCAATGTGGAGTTGACACAGGAAGACGTGAGGCTTATCGGCCTCAGTGCCACACTGCCCAACTATGAGGATGTGGCTACCTGCCTTCGTGTGGATCCATCCAAGGGACTCTTCTATTTTGACAACAGtttccgACCCGTGCCATTGGAACAAACATATGTAGGAATTACAGAGAAGAAGGCTATCAAGCGCTTCCAAATTATGAATGAGATTGTGTATGAGAAGATCATGGAACATGCTGGAAAGAATCAGgTGTTGGTGTTTGTGCACTCAAGAAAGGAGACAGGAAAGACGGCGCGTGCAATCAGGGACATGTGTTTGGAAAAGGACACGCTGGGGTTGTTTCTGAGAGAGGGTTCAGCCTCCACTGAGGTCTTGAGAACTGAAGCTGAGCAGTGCAAGaaCCTGGAGCTGAAAGATCTATTGCCATATGGTTTTGCTATTCATCATGCTGGAATGACCAGAGTGGACAGAACACTGGTAGAGGATCTCTTTGCTGACCGTCACATTCAGgTACTGGTGTCTACAGCCACTCTGGCCTGGGGTGTGAATCTGCCAGCGCACACTGTCATCATCAAAGGCACACAGGTGTACAGCCCAGAGAAAGGCAGATGGACAGAGCTGGGAGCCCTGGATATCCTACAGATGCTGGGTCGTGCTGGCAGGCCACAGTATGACTCTAAAGGAGAGGGTATTCTGATCACTTCCCATGGAGAGCTGCAGTATTACCTGTCCCTGCTCAATCAGCAGCTGCCCATCGAGAGCCAGATGGTGGCCAAACTACCCGACATGCTCAATGCAGAGATCGTGTTGGGCAATGTGCAGAATGCCAAGGATGCTGTAAATTGGCTGGGTTATACATACCTTTATGTTAGAATGTTGCGGAACCCCACCCTATATGGGGTCTCCCACGACGACCGCAGCAGTGACCCCCTGCTGGAGCGGCGCAGGATGGACCTGGTGCACACAGCAGCCACCGTCTTGGAGAAGAACAACTTAGTCAAATATGACAAGAGATCTGGCAGCTTTCAGGTGACGGACCTGGGCCGCATTGCCAGTCATTTCTACATCACCCATGAGTCCATAATGACTTACAACCAGCTGCTAAAGCCTACACTGAGTGAGATTGAGCTCTTCAGGGTGTTCTCGCTCTCCTCTGAGTTCAGAAACATCACTGTCAGAGAGGAAGAAAAACTGGAGCTTCAGAAACTGCTTGAGAGAGTCCCTATTCCGGTAAAGGAAAGCATTGAAGAGCCCAGTGCAAagATTAATGTGCTGCTGCAGGCATATATCTCTCAGCTCAAGCTGGAGGGTTTTGCTCTCATGGCTGACATGGTCTATGTGACCCAGAGTGCTGGCAGACTGATGAGGGCCATCTTTGAGATTGTCCTGAGCAGAGGCTGGGCCCAACTCACAGACAAGACTTTGAACCTTTGCAAGATGATTGACAAAAGGATGTGGCAGTCGATGTCTCCTTTGCGTCAGTTCCGTAAGCTTCCAGAGGAGGTCATCAAAAAGATTGAGAAGAAGAACTTTCCATTCGAGCGGCTCTATGATCTGAACCACAATGAAATTGGTGAGTTGATCCGCATGCCAAAGATGGGGAAGACCATTCATAAGTATGTCCATCAGTTTCCAAAACTGGACCTGGCCGTTCATCTGCAGCCCATCACACGCTCCACTCTAAAAGTGGAGCTCACCATCACACCAGATTTCCAGTGGGATGACAAGATACATGGCTCATCTGAGGCCTTCTGGATCTTGGTGGAGGATGTGGACAGTGAGGTCGTTCTTCATCATGAGTACTTCCTCCTGAAGGCCAAGTACGCTCAGGATGAGCATCTTGTGACGTTCTTTGTTCCCGTGTTTGAGCCGCTACCACCACAGTACTTCATTCGCATAGCTTCAGACCGTTGGCTGTcATGTGAGActcaacttcctgtttcatTCCGTCACCTGATCCTTCCTGAGAAGTATCCTCCCCCGACTGAGCTGCTGGACCTGCAGCCATTGCCCGTGTCCGCTCTGAGAAACGCAGCCTTCGAGAGCCTCTACCAGAACTTTCCCTTTTTCAACCCAATCCAGACCCAAGtgttcaaTGCGGTGTACAACAGCGATGATAATGTCTTTGTTGGAGCCCCCACCGGCAGCGGGAAGACCATATGTGCCGAGTTTGCCATTCTTAGGATGCTCCTACACAACTCAGAGGGCCGCTGTGTTTACATCACACCCATGGAGGCTCTGGCCGAACAGGTCTTTATTGACTGGCACCAGAAGTTTCAGGATACCTTGAATAAGAAGGTTGTCCTGCTCACCGGTGAGACGAGTACTGATCTCAAACTGCTGGGTAAAGGTGACATCATTGTCAGTACCCCAGATAAGTGGGACATCCTGTCCCGCCGCTGGAAACAGAGGAAGAACGTGCAGAATGTTAGTCTCTTCATTGTAGACGAGATTCATCTCATTGGAGGTGACAATGGACCTGTGTTGGAGGTGATTTGCTCCAGGATGCGGTACATCTCCTCTCAGATCGAGCGGCCCATTCGTATCGTGGCCCTCAGTTCCTCTCTGTCCAATGCTAAAGATGTGGCTCACTGGCTTGGCTGCAGCACTACGGCCACCTTCAACTTTCACCCCAATGTCAGGCCGGTTCCTCTTGAGCTTCACATTCAGGGCTTCAATGTGAGTCACACACAGACTCGTCTGCTGTCTATGGCTAAACCAGTGTATCACGCAATAATGAAGCATTCCCCGTCCAAGCCAGTGCTGGTGTTTGTGCCATCAAGACGTCAGACTCGTCTCACTGCTATTGATATCCTCACCTTCTGTGCTGCAGACGTAGTCCCACAGAGGTTCCTGCACTCAACTGAGAAGGACTTGGCTCCATTTATGGAGAATCTCTCTGATGTTACACTGAAGGAGACCCTCTCTAATGGGGTGGGGTACCTTCACGAGGGCCTTTCACCTACAGAGCGCAGGATTGTGGAGCATCTCTTCACCTCtgGTGCCATTCAGGTGATGGTGGCATCTCGTTCTCTCTGCTGGGGCACTAATATTTCTGCCCACCTGGTGATTGTCATGGACACACAGTACTACAATGGAAAAATCCATGCATATGTGGACTACCCAATCTATGATGTGCTCCAGATGGTAGGAAAGGCTAACCGTCCCCTCCAGGATGACGAGGGTCGCTGTGTCATCATGTGTCAAGGGTCTAAAAAGGACTTCTTTAAGAAGTTCCTCTATGAGCCTCTGCCTGTGGAGTCTCACCTGGACCATTGTCTTCACGATCATTTCAATGCTGAGATCGTCACAAAGACAGTGGAGAACAAACAGGACGCTGTAGACTACCTGACATGGACATTCCTGTATCGCCGCATGACCCAAAACCCCAACTACTACAACCTGCAGGGTATGTCCCATCGCCACCTGTCAGATCATCTGTCTGAGCTGGTGGAAAACACCTTGCAAGATCTGGAGCAGTCCAAGTGCATCAGCATCGAGGATGAGATGGATGTTGCACCTCTGAATCTGGGCATGATCGCAGCCTATTATTACATAAACTACACCACCATTGAACTCTTTAGTATGTCCCTGAATGCCAAGACAAAGGTCCGTGGCCTCATTGAGATCATCTCCAATGCTGCAGAGTATAAAAACATTCCCATCAGACACCATGAAGACACCCTGCTGCGGCAGCTGGCTCAAAAAGTTCCTCACAAACTGAACAACCCCAAGTTCAATGACCCTCATGTGAAGACCAACCTGCTGCTCCAGTCTCATCTGTCCCGCATGCAGCTGAGCGCTGAGCTCCAGTCAGATACTGAGGATATCCTCAGCAAGGCTGTGCGGCTGATCCAGGCGTGTGTGGATGTGCTCTCCAGTAACGGCTGGTTGAGTCCGGCGCTGGCTGCTATGGAGCTGGCTCAGATGGTCACACAAGCCATGTGGTCCAAAGACTCTTACCTCAAACAGCTCCCCCACTTCACTTCTGAACACATCAAGCGCTGCACAGACAAGGGTGTGGAGAGCATCTTCGACATCATGGAGATGGAAGACGAGGACCGCACTGGTCTTCTGCAGCTTACAGATGTACAAATGGCAGATGTGGCAAGATTCTGTAACCGCTATCCCAACATTGAGCTGTCGTATGAGGTGGCTGACAAAGACAACATCAAGAGTGGAAGTCCAGTGGTCGTCCAAGTGCAGTTGGAGCGAGAAGAGGAAGTTACAGGTCCAGTCATTGCTCCTCTGTTCCCTCAGAAACGTGAAGAAGGCTGGTGGGTTGTTATTGGTGACCCCAAATCAAACAGTCTCATCTCAATCAAGAGACTAACTCTTCAGCAGAAGGCCAAGGTGAAACTTGACTTTGTGGCACCTGTTGTTGGAGTGCACAACTACACACTGTACTTCATGAGCGATGCCTACATGGGCTGCGACCAGGAATACAAGTTCAGCATGGACGTTAAAGAAGCAGACAGTGAGGGAGAAAGTGACAGTGATTAATCCCAGTTTAGTCATAGTGGGAACGGTTGTACTGTCACGTGAAagcagtttgtgtttttatatatatttttgaggaaTATTGCGACTGTTTAATTCattgtgatttaaataaagaaacatgtACATTGGA

Function

symbol description
snrnp200 Predicted to enable RNA binding activity and RNA helicase activity. Predicted to be involved in spliceosome conformational change to release U4 (or U4atac) and U1 (or U11). Predicted to be part of spliceosomal complex. Human ortholog(s) of this gene implicated in retinitis pigmentosa and retinitis pigmentosa 33. Orthologous to human SNRNP200 (small nuclear ribonucleoprotein U5 subunit 200).

NR:

description
PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12854 SNRNP200, BRR2; pre-mRNA-splicing helicase BRR2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247034.1 True 6797 mRNA 0.49 45 14707862 14722945

Neighbor

gene id symbol gene type direction distance location
ralgds si:ch211-251j10.3,LOC107667531,LOC107724899,LOC107602853,LOC107600003,LOC107667907,LOC107711877 coding downstream 14262 14671725 ~ 14693600 (-)
smarcb1a smarcb1a,smarcb1,LOC107602851,LOC107600005,LOC107667904 coding downstream 37456 14664819 ~ 14670406 (-)
gstt1a gstt1a,LOC107724878,LOC107667523,LOC107602832,LOC107689282,LOC107711839,LOC107600045 coding downstream 67829 14638563 ~ 14640033 (-)
p2rx7 p2rx7,LOC107724924,LOC107667522,LOC107602831,LOC107711876,LOC107600008 coding downstream 72418 14629822 ~ 14635444 (-)
gucd1 gucd1,LOC107724905,LOC107711875,LOC107689268 coding downstream 82806 14620656 ~ 14625056 (-)
vgll4l vgll4l,LOC107724882,LOC107667543,LOC107711841,LOC107600043,LOC107602859,LOC107686413,LOC107686414 coding upstream 18364 14741309 ~ 14758651 (-)
gadd45ga gadd45ga,LOC107724875,LOC107667521,LOC107686412,LOC107602833,LOC107600042,LOC108412735 coding upstream 115819 14838764 ~ 14840345 (-)
creb3l3l creb3l3l,LOC107711890,LOC107686399,LOC107724916,LOC107667558,LOC107599998 coding upstream 119549 14842494 ~ 14847964 (-)
nim1ka nim1k,LOC107602863,LOC107667564,LOC107686411,LOC107599996,LOC108412738 coding upstream 125561 14848506 ~ 14858964 (-)
znf131 znf131,LOC107667557,LOC107602864,LOC107724914,LOC107686396,LOC107711893 coding upstream 136692 14859637 ~ 14863781 (-)
G63997 NA non-coding downstream 409272 14298291 ~ 14298590 (-)
G63981 NA non-coding downstream 438099 14268604 ~ 14269763 (-)
G63980 NA non-coding downstream 441819 14265726 ~ 14266043 (-)
G63979 NA non-coding downstream 442227 14265172 ~ 14265635 (-)
G63976 NA non-coding downstream 503941 14203642 ~ 14203921 (-)
G64223 NA non-coding upstream 46028 14768973 ~ 14769271 (-)
G64227 NA non-coding upstream 55953 14778898 ~ 14779364 (-)
G64236 NA non-coding upstream 115436 14838381 ~ 14838616 (-)
G64238 NA non-coding upstream 117578 14840523 ~ 14840766 (-)
G64229 sepp1a,LOC107576224 non-coding upstream 142853 14865798 ~ 14869687 (-)
LOC122350784 zgc:162939,LOC107602843,LOC107674500,LOC107724903 other downstream 252619 14385600 ~ 14455243 (-)
G63933 LOC107556304,LOC107751435,LOC107594508 other downstream 844612 13809428 ~ 13863250 (-)
mc3r mc3r,LOC107751459,LOC107669608,LOC107711834,LOC107680356 other downstream 987348 13716628 ~ 13720514 (-)
tafa3b si:ch211-254n4.3,fam19a3,LOC107711931,LOC107591764,LOC107562776,LOC107669582,LOC102289964,LOC104918365,LOC106582736,LOC105921069,LOC106517667,LOC108231490,LOC106937909 other downstream 1461732 13185867 ~ 13246130 (-)
zmynd12 zymnd12,LOC107591768,LOC107711949,LOC107679700 other downstream 1624490 12985654 ~ 13083372 (-)
slc20a1a slc20a1a,LOC107724894,LOC107711884,LOC107686402,LOC107667554,LOC107602858,LOC108440301 other upstream 767 14723712 ~ 14731391 (-)
G64228 NA other upstream 56586 14779531 ~ 14781710 (-)
G64353 hmcn2,LOC107723245,LOC107659581,LOC107570300 other upstream 560916 15283861 ~ 15284130 (-)
mvb12bb mvb12b,LOC107550570,LOC107753158,LOC107723228 other upstream 926281 15649226 ~ 15700896 (-)
LOC122350093 NA other upstream 1684889 16407834 ~ 16409696 (-)

Expression


Co-expression Network