RNA id: XM_043247034.1


Basic Information

Item Value
RNA id XM_043247034.1
length 6797
RNA type mRNA
GC content 0.49
exon number 45
gene id snrnp200
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 14707862 ~ 14722945 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATAACTGCGTTTTGAAACCGTCGTGCGTGTTTCAGACGTATGGTGCAGTTTCGGAGATAAAGAAAAAGAGACTTAACTTTTCAAAGTGTGTTATTATTGTAGTGTGCACGTAATTCGTGCGCACTGAGCCAGTTCTCGCTTAACTGGGAACATACATGAGTGCTGTGTAGTTTATTTACCCGTCTGTCTTTCCGCTAGCGCCGGCTGTGCTGGTTGATAAAGAAGATTTTCATTCTGAGGGCATTTACAGTAATAAGAAGTCATGGCGGATGTTACTGCGCGTAGTTTGCAGTATGAATACAAAGCGAACTCCAACTTGGTGTTGCAAGCGGACAGATCTCTGATCGACCGGACCCGCAGAGATGAGCCCACCGGAGAGGTGCTGTCTCTGGTCGGAAAACTGGAGGGAACAAAAATGGGAGACAGGAGTCAGAGAACCAAACCTCAGAtgctggaggagaggagagcaAAgagaagaaagagagacgaAGACAGACATGACATAAACAAGATGAAGGGCTTCACGTTGCTGTCTGAGGGGATCGATGAGATGGTGGGCATCGTATACAAGCCCAAGACCAAAGAGACGAGAGAAACGTATGAAATTCTTCTCAGCTTCATTCAGGCTGCCCTTGGAGATCAGCCCAGGGATATCCTTTGTGGAGCTGCAGATGAGGTGTTGGCTGTGCTGAAGAATGACAAGatgagagacaaagagaggaggagggaggTGGAGCAGTTGCTGGGGCCCACGGACGACACGCGTTACCACGTCCTGGTCAACCTGGGCAAGAAGATCTCTGACTACGGTGGAGACAAAGAGCTCCAAAATATGGATGATAACATTGATGAAACCTATGGAGTCAATGTGCAGTTTGAGTCTGATGAGGAGGAGGGCGATGAGGACCAGTATGGAGAGGTTCGGGATGAAGGCTCTGATGACAGCGAGGGAGAGGAGGCAGATGAGAGCAGCACCTTGACTGCTAATCTGGGAAACACAGGCGACGTGATGATGACCAAAAAGAAGGATCTTCACCCTCGAGACATCGATGCTTTCTGGCTCCAGCGACAGCTCAGCCGCTTCTACAATGATGCTATCGTGTCTCAGAAGAAAGCAGATGAGGTTTTGGAAATCCTTAAGACGGCCAGTGACGACAGAGAGTGTGAGAACCAGTTGGTGCTGCTTTTGGGCTTCAACACGTTTGACTTCATTAAGGTCCTCCGCCAGCACAGGCGAATGAtccTGTACTGCACAATGTTGGCCAGCGCCCAAAGTGAggctgagaaagagaaaatcaTGAACAAAATGGAAGCTGATCAGGATCTTTCCAAAGTTCTTTACCAGCTGCAGGAGACTGAGAAAGAGGACATCATCAGGGAGGAGCGATCTCGCCGGGAGAGAGTACGAAAGTCTCGTGTAGATGATCTGGAGTCTATGGACATCGATCATGGAGAGGCTGTGACCTCGAGGCAAGTACTAGATCTTGAAGACCTGGCCTTCTCTCAGGGCAGTCACTTCATGGCCAACAAGCGTTGTCAGCTGCCAGACGGCTCCTTCCGCAAACAGAGGAAGGGTTACGAGGAGGTCCATGTGCCTGCTCTCAAACCCAAACCCTTTGGTGATGAAGAGACACTGGTGGCTATTGAGAAGCTACCCAAATATGCCCAAGCTGGATTTGAAGGATTTAAAACCTTGAATCGCATACAGAGTAAACTCTTTAAAACCACAATGGAGACAGATGAAAACCTGCTGGTTTGTGCCCCAACGGGTGCTGGCAAAACCAATGTTGCTCTTATGGCAATGCTCAGAGAGATCGGAAAGCACATCAACATGGATGGCACCATCAATGTTGATGATTTTAAAATCATCTATATTGCTCCCATGCGCTCACTAGTACAGGAGATGGTGGGCAGCTTTGGGAAGCGTTTGGCTAGTTATGGCATAACTGTTTCTGAGCTGACCGGTGACCATCAGCTGTGTAAAGAGGAAATAAATGCCACCCAGATTATCGTGTGCACCCCAGAGAAATGGGACATCATCACCCGAAAAGGAGGAGAACGCACATATACGCAGCTTGTGCGCCTTATCATTATTGATGAGATCCACTTGCTGCATGATGATCGTGGCCCCGTTCTGGAGTCCCTGATTGCTCGAACTATCCGCAATGTGGAGTTGACACAGGAAGACGTGAGGCTTATCGGCCTCAGTGCCACACTGCCCAACTATGAGGATGTGGCTACCTGCCTTCGTGTGGATCCATCCAAGGGACTCTTCTATTTTGACAACAGtttccgACCCGTGCCATTGGAACAAACATATGTAGGAATTACAGAGAAGAAGGCTATCAAGCGCTTCCAAATTATGAATGAGATTGTGTATGAGAAGATCATGGAACATGCTGGAAAGAATCAGgTGTTGGTGTTTGTGCACTCAAGAAAGGAGACAGGAAAGACGGCGCGTGCAATCAGGGACATGTGTTTGGAAAAGGACACGCTGGGGTTGTTTCTGAGAGAGGGTTCAGCCTCCACTGAGGTCTTGAGAACTGAAGCTGAGCAGTGCAAGaaCCTGGAGCTGAAAGATCTATTGCCATATGGTTTTGCTATTCATCATGCTGGAATGACCAGAGTGGACAGAACACTGGTAGAGGATCTCTTTGCTGACCGTCACATTCAGgTACTGGTGTCTACAGCCACTCTGGCCTGGGGTGTGAATCTGCCAGCGCACACTGTCATCATCAAAGGCACACAGGTGTACAGCCCAGAGAAAGGCAGATGGACAGAGCTGGGAGCCCTGGATATCCTACAGATGCTGGGTCGTGCTGGCAGGCCACAGTATGACTCTAAAGGAGAGGGTATTCTGATCACTTCCCATGGAGAGCTGCAGTATTACCTGTCCCTGCTCAATCAGCAGCTGCCCATCGAGAGCCAGATGGTGGCCAAACTACCCGACATGCTCAATGCAGAGATCGTGTTGGGCAATGTGCAGAATGCCAAGGATGCTGTAAATTGGCTGGGTTATACATACCTTTATGTTAGAATGTTGCGGAACCCCACCCTATATGGGGTCTCCCACGACGACCGCAGCAGTGACCCCCTGCTGGAGCGGCGCAGGATGGACCTGGTGCACACAGCAGCCACCGTCTTGGAGAAGAACAACTTAGTCAAATATGACAAGAGATCTGGCAGCTTTCAGGTGACGGACCTGGGCCGCATTGCCAGTCATTTCTACATCACCCATGAGTCCATAATGACTTACAACCAGCTGCTAAAGCCTACACTGAGTGAGATTGAGCTCTTCAGGGTGTTCTCGCTCTCCTCTGAGTTCAGAAACATCACTGTCAGAGAGGAAGAAAAACTGGAGCTTCAGAAACTGCTTGAGAGAGTCCCTATTCCGGTAAAGGAAAGCATTGAAGAGCCCAGTGCAAagATTAATGTGCTGCTGCAGGCATATATCTCTCAGCTCAAGCTGGAGGGTTTTGCTCTCATGGCTGACATGGTCTATGTGACCCAGAGTGCTGGCAGACTGATGAGGGCCATCTTTGAGATTGTCCTGAGCAGAGGCTGGGCCCAACTCACAGACAAGACTTTGAACCTTTGCAAGATGATTGACAAAAGGATGTGGCAGTCGATGTCTCCTTTGCGTCAGTTCCGTAAGCTTCCAGAGGAGGTCATCAAAAAGATTGAGAAGAAGAACTTTCCATTCGAGCGGCTCTATGATCTGAACCACAATGAAATTGGTGAGTTGATCCGCATGCCAAAGATGGGGAAGACCATTCATAAGTATGTCCATCAGTTTCCAAAACTGGACCTGGCCGTTCATCTGCAGCCCATCACACGCTCCACTCTAAAAGTGGAGCTCACCATCACACCAGATTTCCAGTGGGATGACAAGATACATGGCTCATCTGAGGCCTTCTGGATCTTGGTGGAGGATGTGGACAGTGAGGTCGTTCTTCATCATGAGTACTTCCTCCTGAAGGCCAAGTACGCTCAGGATGAGCATCTTGTGACGTTCTTTGTTCCCGTGTTTGAGCCGCTACCACCACAGTACTTCATTCGCATAGCTTCAGACCGTTGGCTGTcATGTGAGActcaacttcctgtttcatTCCGTCACCTGATCCTTCCTGAGAAGTATCCTCCCCCGACTGAGCTGCTGGACCTGCAGCCATTGCCCGTGTCCGCTCTGAGAAACGCAGCCTTCGAGAGCCTCTACCAGAACTTTCCCTTTTTCAACCCAATCCAGACCCAAGtgttcaaTGCGGTGTACAACAGCGATGATAATGTCTTTGTTGGAGCCCCCACCGGCAGCGGGAAGACCATATGTGCCGAGTTTGCCATTCTTAGGATGCTCCTACACAACTCAGAGGGCCGCTGTGTTTACATCACACCCATGGAGGCTCTGGCCGAACAGGTCTTTATTGACTGGCACCAGAAGTTTCAGGATACCTTGAATAAGAAGGTTGTCCTGCTCACCGGTGAGACGAGTACTGATCTCAAACTGCTGGGTAAAGGTGACATCATTGTCAGTACCCCAGATAAGTGGGACATCCTGTCCCGCCGCTGGAAACAGAGGAAGAACGTGCAGAATGTTAGTCTCTTCATTGTAGACGAGATTCATCTCATTGGAGGTGACAATGGACCTGTGTTGGAGGTGATTTGCTCCAGGATGCGGTACATCTCCTCTCAGATCGAGCGGCCCATTCGTATCGTGGCCCTCAGTTCCTCTCTGTCCAATGCTAAAGATGTGGCTCACTGGCTTGGCTGCAGCACTACGGCCACCTTCAACTTTCACCCCAATGTCAGGCCGGTTCCTCTTGAGCTTCACATTCAGGGCTTCAATGTGAGTCACACACAGACTCGTCTGCTGTCTATGGCTAAACCAGTGTATCACGCAATAATGAAGCATTCCCCGTCCAAGCCAGTGCTGGTGTTTGTGCCATCAAGACGTCAGACTCGTCTCACTGCTATTGATATCCTCACCTTCTGTGCTGCAGACGTAGTCCCACAGAGGTTCCTGCACTCAACTGAGAAGGACTTGGCTCCATTTATGGAGAATCTCTCTGATGTTACACTGAAGGAGACCCTCTCTAATGGGGTGGGGTACCTTCACGAGGGCCTTTCACCTACAGAGCGCAGGATTGTGGAGCATCTCTTCACCTCtgGTGCCATTCAGGTGATGGTGGCATCTCGTTCTCTCTGCTGGGGCACTAATATTTCTGCCCACCTGGTGATTGTCATGGACACACAGTACTACAATGGAAAAATCCATGCATATGTGGACTACCCAATCTATGATGTGCTCCAGATGGTAGGAAAGGCTAACCGTCCCCTCCAGGATGACGAGGGTCGCTGTGTCATCATGTGTCAAGGGTCTAAAAAGGACTTCTTTAAGAAGTTCCTCTATGAGCCTCTGCCTGTGGAGTCTCACCTGGACCATTGTCTTCACGATCATTTCAATGCTGAGATCGTCACAAAGACAGTGGAGAACAAACAGGACGCTGTAGACTACCTGACATGGACATTCCTGTATCGCCGCATGACCCAAAACCCCAACTACTACAACCTGCAGGGTATGTCCCATCGCCACCTGTCAGATCATCTGTCTGAGCTGGTGGAAAACACCTTGCAAGATCTGGAGCAGTCCAAGTGCATCAGCATCGAGGATGAGATGGATGTTGCACCTCTGAATCTGGGCATGATCGCAGCCTATTATTACATAAACTACACCACCATTGAACTCTTTAGTATGTCCCTGAATGCCAAGACAAAGGTCCGTGGCCTCATTGAGATCATCTCCAATGCTGCAGAGTATAAAAACATTCCCATCAGACACCATGAAGACACCCTGCTGCGGCAGCTGGCTCAAAAAGTTCCTCACAAACTGAACAACCCCAAGTTCAATGACCCTCATGTGAAGACCAACCTGCTGCTCCAGTCTCATCTGTCCCGCATGCAGCTGAGCGCTGAGCTCCAGTCAGATACTGAGGATATCCTCAGCAAGGCTGTGCGGCTGATCCAGGCGTGTGTGGATGTGCTCTCCAGTAACGGCTGGTTGAGTCCGGCGCTGGCTGCTATGGAGCTGGCTCAGATGGTCACACAAGCCATGTGGTCCAAAGACTCTTACCTCAAACAGCTCCCCCACTTCACTTCTGAACACATCAAGCGCTGCACAGACAAGGGTGTGGAGAGCATCTTCGACATCATGGAGATGGAAGACGAGGACCGCACTGGTCTTCTGCAGCTTACAGATGTACAAATGGCAGATGTGGCAAGATTCTGTAACCGCTATCCCAACATTGAGCTGTCGTATGAGGTGGCTGACAAAGACAACATCAAGAGTGGAAGTCCAGTGGTCGTCCAAGTGCAGTTGGAGCGAGAAGAGGAAGTTACAGGTCCAGTCATTGCTCCTCTGTTCCCTCAGAAACGTGAAGAAGGCTGGTGGGTTGTTATTGGTGACCCCAAATCAAACAGTCTCATCTCAATCAAGAGACTAACTCTTCAGCAGAAGGCCAAGGTGAAACTTGACTTTGTGGCACCTGTTGTTGGAGTGCACAACTACACACTGTACTTCATGAGCGATGCCTACATGGGCTGCGACCAGGAATACAAGTTCAGCATGGACGTTAAAGAAGCAGACAGTGAGGGAGAAAGTGACAGTGATTAATCCCAGTTTAGTCATAGTGGGAACGGTTGTACTGTCACGTGAAagcagtttgtgtttttatatatatttttgaggaaTATTGCGACTGTTTAATTCattgtgatttaaataaagaaacatgtACATTGGA

Function

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12854 SNRNP200, BRR2; pre-mRNA-splicing helicase BRR2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94902 lncRNA downstream 284962 14385604 ~ 14422900 (-) False LOC122350784
TU94714 lncRNA downstream 409272 14298291 ~ 14298590 (-) True G63997
TU94694 lncRNA downstream 438099 14268604 ~ 14269763 (-) True G63981
TU94690 lncRNA downstream 441819 14265726 ~ 14266043 (-) True G63980
TU94689 lncRNA downstream 442227 14265172 ~ 14265635 (-) True G63979
TU95018 lncRNA upstream 46028 14768973 ~ 14769271 (-) True G64223
TU95022 lncRNA upstream 55953 14778898 ~ 14779364 (-) True G64227
TU95038 lncRNA upstream 115436 14838381 ~ 14838616 (-) True G64236
TU95040 lncRNA upstream 117578 14840523 ~ 14840766 (-) True G64238
TU95030 lncRNA upstream 142853 14865798 ~ 14869687 (-) False G64229
XM_043247037.1 mRNA downstream 14262 14671725 ~ 14693600 (-) False ralgds
XM_043247036.1 mRNA downstream 16814 14671725 ~ 14691048 (-) True ralgds
XM_043247035.1 mRNA downstream 20412 14671725 ~ 14687450 (-) False ralgds
XM_043247124.1 mRNA downstream 37456 14664819 ~ 14670406 (-) False smarcb1a
XM_043247123.1 mRNA downstream 37456 14664819 ~ 14670406 (-) True smarcb1a
XM_043247403.1 mRNA upstream 767 14723712 ~ 14731388 (-) True slc20a1a
XM_043246745.1 mRNA upstream 18364 14741309 ~ 14758651 (-) True vgll4l
XM_043247974.1 mRNA upstream 115819 14838764 ~ 14840345 (-) True gadd45ga
XM_043247621.1 mRNA upstream 119549 14842494 ~ 14847964 (-) True creb3l3l
XM_043246235.1 mRNA upstream 125561 14848506 ~ 14858964 (-) False nim1ka
TU94636 other downstream 844612 13809428 ~ 13863250 (-) True G63933
XR_006251575.1 other downstream 2344767 12351246 ~ 12363095 (-) False kcnq2a
TU93842 other downstream 2443329 12263694 ~ 12264533 (-) True G63385
unassigned_transcript_1295 other downstream 2910660 11797130 ~ 11797202 (-) True trnaf-gaa_1
TU93692 other downstream 2928611 11778271 ~ 11779251 (-) True G63274
XR_006251614.1 other upstream 1263 14724208 ~ 14731391 (-) False slc20a1a
TU95023 other upstream 56586 14779531 ~ 14781710 (-) True G64228
TU95181 other upstream 560916 15283861 ~ 15284130 (-) True G64353
XR_006251609.1 other upstream 926281 15649226 ~ 15700896 (-) False mvb12bb
XR_006251608.1 other upstream 933974 15656919 ~ 15700896 (-) False mvb12bb

Expression Profile