Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_043247123.1 |
| length | 1538 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 9 |
| gene id | smarcb1a |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_056706.1 |
| NCBI id | CM032075.1 |
| chromosome length | 24299999 |
| location | 14664819 ~ 14670406 (-) |
| genome version | ASM1883169v1_2021_tiger_barb_Genome |
| species | tiger barb (Puntius tetrazona) |
| id | name | namespace |
|---|---|---|
| GO:0006337 | nucleosome disassembly | biological_process |
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0030154 | cell differentiation | biological_process |
| GO:0043044 | ATP-dependent chromatin remodeling | biological_process |
| GO:0044772 | mitotic cell cycle phase transition | biological_process |
| GO:0008285 | negative regulation of cell population proliferation | biological_process |
| GO:0006281 | DNA repair | biological_process |
| GO:0000228 | nuclear chromosome | cellular_component |
| id | description |
|---|---|
| K11648 | SMARCB1, SNF5, INI1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU94902 | lncRNA | downstream | 241919 | 14385604 ~ 14422900 (-) | False | LOC122350784 |
| TU94714 | lncRNA | downstream | 366229 | 14298291 ~ 14298590 (-) | True | G63997 |
| TU94694 | lncRNA | downstream | 395056 | 14268604 ~ 14269763 (-) | True | G63981 |
| TU94690 | lncRNA | downstream | 398776 | 14265726 ~ 14266043 (-) | True | G63980 |
| TU94689 | lncRNA | downstream | 399184 | 14265172 ~ 14265635 (-) | True | G63979 |
| TU95018 | lncRNA | upstream | 98567 | 14768973 ~ 14769271 (-) | True | G64223 |
| TU95022 | lncRNA | upstream | 108492 | 14778898 ~ 14779364 (-) | True | G64227 |
| TU95038 | lncRNA | upstream | 167975 | 14838381 ~ 14838616 (-) | True | G64236 |
| TU95040 | lncRNA | upstream | 170117 | 14840523 ~ 14840766 (-) | True | G64238 |
| TU95030 | lncRNA | upstream | 195392 | 14865798 ~ 14869687 (-) | False | G64229 |
| XM_043247966.1 | mRNA | downstream | 24786 | 14638563 ~ 14640033 (-) | True | gstt1a |
| XM_043246683.1 | mRNA | downstream | 29375 | 14629822 ~ 14635444 (-) | True | p2rx7 |
| XM_043246687.1 | mRNA | downstream | 39763 | 14620656 ~ 14625056 (-) | True | gucd1 |
| XM_043246722.1 | mRNA | downstream | 171401 | 14455427 ~ 14493418 (-) | True | dock8 |
| XM_043247037.1 | mRNA | upstream | 1319 | 14671725 ~ 14693600 (-) | False | ralgds |
| XM_043247036.1 | mRNA | upstream | 1319 | 14671725 ~ 14691048 (-) | True | ralgds |
| XM_043247035.1 | mRNA | upstream | 1319 | 14671725 ~ 14687450 (-) | False | ralgds |
| XM_043247034.1 | mRNA | upstream | 37456 | 14707862 ~ 14722945 (-) | True | snrnp200 |
| XM_043247403.1 | mRNA | upstream | 53306 | 14723712 ~ 14731388 (-) | True | slc20a1a |
| TU94636 | other | downstream | 801569 | 13809428 ~ 13863250 (-) | True | G63933 |
| XR_006251575.1 | other | downstream | 2301724 | 12351246 ~ 12363095 (-) | False | kcnq2a |
| TU93842 | other | downstream | 2400286 | 12263694 ~ 12264533 (-) | True | G63385 |
| unassigned_transcript_1295 | other | downstream | 2867617 | 11797130 ~ 11797202 (-) | True | trnaf-gaa_1 |
| TU93692 | other | downstream | 2885568 | 11778271 ~ 11779251 (-) | True | G63274 |
| XR_006251614.1 | other | upstream | 53802 | 14724208 ~ 14731391 (-) | False | slc20a1a |
| TU95023 | other | upstream | 109125 | 14779531 ~ 14781710 (-) | True | G64228 |
| TU95181 | other | upstream | 613455 | 15283861 ~ 15284130 (-) | True | G64353 |
| XR_006251609.1 | other | upstream | 978820 | 15649226 ~ 15700896 (-) | False | mvb12bb |
| XR_006251608.1 | other | upstream | 986513 | 15656919 ~ 15700896 (-) | False | mvb12bb |
