RNA id: TU94694


Basic Information

Item Value
RNA id TU94694
length 1160
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G63981
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 14268604 ~ 14269763 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gaaaaataaaacacggttatttttattattgcctCAGTTTTATTCcacataaatgtcttttctgttgCAAGCAGtagtattataaattattagtgGAAATTCCCTGTAGTAAAAACAGAAACCCCTTTAATACAAGTGAAAACTGATAGTTATCCTGTCAACTGTATTTCAATCAGGACAGCTCGCTCAAGGGCGAACGACTTTATTAACAACTACATCTGCGTGGAAATCCCCCATCAGACTGCACTTGTTTACATCCTTTAGCTGCTCAGCATCTTCGAGACACATTTGAAACTCGACTCCAGAGAATCAGCACAGCTAACAGTCAAAACTCTGCCCCCTGCCGGCCGAAGGACTGCCGTAGTTAAAAGGTAAACGAGACATAACACAATTAATGCGGTGAATATAGCggtccttttttaaaaacaaaaatgctgtaaGTTATCGTCATAcgtatattaatatacatttcttttttcttgttgcGCTGTCAGCGTTTTCATAATTATGCTGTGGATACGGTGATTAATCACGTAAACGTCGATATAAGGGGATAACGACTTAAAATCGTAACATTTAATCACCTTCAAGATGTAAAGATCACTACTTCGTTTAACCGCTAGGTGGCGCCAAATATCCCTTTGAGTGTTTAGTGGatgttaatgttttcttttttataaaacgCACTTTAAATACGACCAAACATTTCTAATCTCAAAATATAGACGAAAACTAACAAGGCCACATCTCCCGCTCTGTCATTTGGCCTTTCGCGGGATTGTCCTTCTGTTAATGTTATCAAGGTCAGCGCGGCTCAACTATCTCCTTTCTACTGATATGATTATGATTAATAACGATAATGTGTTCTGTTATTGACACTGATGTAGTGTATTTTGAAGGACTGTGGGTAAACAAAGACCTGTCAGTTTTTCTTCCTCTCCCTTTCTTTCCCGGCCTTCcattaatgacaaaaaagtatTGTCATAATTAGCGCAAACTAATTTAGTTTTGGTGTTTAGGTATCAAATGTTcaatactgtacatatacttaTAGAAGGACAGCTCTCAGCATCCGACCCTCATCTTCACATATTCCCTAAAATGGTGCTGAAATGCTTCGCTCCGCAGGACCCAGGTGGGAATGGACTGCACGATCCCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94690 lncRNA downstream 2561 14265726 ~ 14266043 (-) True G63980
TU94689 lncRNA downstream 2969 14265172 ~ 14265635 (-) True G63979
TU94683 lncRNA downstream 64683 14203642 ~ 14203921 (-) True G63976
TU94682 lncRNA downstream 65334 14203046 ~ 14203270 (-) True G63975
TU94662 lncRNA downstream 131181 14131391 ~ 14137423 (-) True G63955
TU94714 lncRNA upstream 28528 14298291 ~ 14298590 (-) True G63997
TU94902 lncRNA upstream 115841 14385604 ~ 14422900 (-) False LOC122350784
TU95018 lncRNA upstream 499210 14768973 ~ 14769271 (-) True G64223
TU95022 lncRNA upstream 509135 14778898 ~ 14779364 (-) True G64227
TU95038 lncRNA upstream 568618 14838381 ~ 14838616 (-) True G64236
XM_043247241.1 mRNA downstream 9560 14225356 ~ 14259044 (-) False slc20a2
XM_043247238.1 mRNA downstream 9560 14225356 ~ 14259044 (-) False slc20a2
XM_043247237.1 mRNA downstream 9561 14225356 ~ 14259043 (-) False slc20a2
XM_043247240.1 mRNA downstream 21229 14225356 ~ 14247375 (-) True slc20a2
XM_043247239.1 mRNA downstream 23836 14225356 ~ 14244768 (-) False slc20a2
XM_043247806.1 mRNA upstream 3773 14273536 ~ 14285846 (-) True ercc6l2
XM_043247496.1 mRNA upstream 115837 14385600 ~ 14455243 (-) True LOC122350784
XM_043246722.1 mRNA upstream 185664 14455427 ~ 14493418 (-) True dock8
XM_043246723.1 mRNA upstream 185664 14455427 ~ 14485235 (-) False dock8
XM_043246687.1 mRNA upstream 350893 14620656 ~ 14625056 (-) True gucd1
TU94636 other downstream 405354 13809428 ~ 13863250 (-) True G63933
XR_006251575.1 other downstream 1905509 12351246 ~ 12363095 (-) False kcnq2a
TU93842 other downstream 2004071 12263694 ~ 12264533 (-) True G63385
unassigned_transcript_1295 other downstream 2471402 11797130 ~ 11797202 (-) True trnaf-gaa_1
TU93692 other downstream 2489353 11778271 ~ 11779251 (-) True G63274
XR_006251614.1 other upstream 454445 14724208 ~ 14731391 (-) False slc20a1a
TU95023 other upstream 509768 14779531 ~ 14781710 (-) True G64228
TU95181 other upstream 1014098 15283861 ~ 15284130 (-) True G64353
XR_006251609.1 other upstream 1379463 15649226 ~ 15700896 (-) False mvb12bb
XR_006251608.1 other upstream 1387156 15656919 ~ 15700896 (-) False mvb12bb

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU577795 True 2923 lncRNA 0.36 2 CI01000347 1397084 ~ 1432086 (+)