RNA id: XM_043246687.1


Basic Information

Item Value
RNA id XM_043246687.1
length 2279
RNA type mRNA
GC content 0.43
exon number 6
gene id gucd1
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 14620656 ~ 14625056 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATATAAGCCCCACAACGAAACAATATTCATATTTCCCCCTGCAAATATTCctgtttatttatgttgaattatgaatacaaataataattattattaatcaaacgagttaattattttgttaattgtattacTGAGCGTCGTATGTTTAATTTGTGATGCTCATAGCTTGTTACTATacgtatattaaatatataaacagaattctcatttctataaaaatctataaatattctAGTTCGTCTCTATTTTTGTCGATTTGAGGTGGGGTTTCCTGTGATTCGCCAGCAGGGGGCGCAGCTCCGTCTGTTTTCAATGGTTTGGATTGACATAGAGGAAGTGAAACATTCATCCCAGGGAAAGACCTCAAGGCGTGGGCGAAGCGAGCCGCGTTTGTAGTTGTTTCTCCGCTTTTCACGAACAGTTCGTTAAAGGCTTTCACCGAGCTGAAGATGGACAGAGTTTAGCGAGTCCTATGTGGAGGACAAGAGGGCAACAGCTGTCCGGCTAACGTTACCCCCGCTAGCGGACTTCATCTTCATGAATCGAGCCCTTGCTGTTAAACAGCACTGAAACACAACAACACAGAGAGACACGCACCAGCTGGATCATGAACGATGATGTGATGTTAAATGTACCGGTCATCCGGCAGCTGTACCACTGGGATTGTGGCTTGGCCTGTTCGAGAATGGTACTAGAgtATTTACATCCAATAAGTGAGGAGGAATTTCAGAGAGCGTGCTTGGACTTAGAGTTTACAGAGAGCGTGTGGACTATTGACCTGGCTTATCTCATGTGTAAGCTGGGGGTCAGACACTGCTTCTGCACACAGACGCTCGGCGTGGACAAGGGCTTCAGGAACCAGTCTTTctacaaaaagcattttgataCAGAAGAGGACCGGGTCAATGAGCTGTTTCTGAAGGCTGAAAGCAAAGGAGTCCTGGTGAAAAAATGCTCTGTTACGGTTCAGGAGATCCAGAGCCACCTGGAGCAGGGTCACGTGGCCATCGTGCTGGTCAATGCAGTGGTGTTGGTGTGTGAGCTGTGCTCCACGCCTGTCAAATACTGCTGTTTCCTCCCTGTGGGTCAGAAGTGCTTTTGCAGGAAGCCAGATTACCAGGGCCACTTTGTGGTGGTGTGTGGATTTAATCGGAAAACTCGCAGCATCTTCTACAACAACCCTGCCTACTCGGACCgtgtgTGCTGCACAAGCTTTAGTAATTTCGAGGAGGCCAGAAGAAGCTACGGAACTGACGAAGATATCCTGTTCGTCTACAAAGACGGCTGAGTCTCGACTGCTTCTGAACCAACAAACTTTTGCATCCACTGTGGTTGGCTGGGTAGCATTTTTGCCAACAGGAACCAGTGCTGCTGGCCAATAGCAGGTAGTATGTGTCACCTCTGGCTATGGTCTTCATTAAAGCTATAGCGTCGCACAAAGCATTACTATGGTGCTACATTGGCCACAGAATGAAATCTTCACACAGTAAGGAAAGGGAAATCTATATGTAACTCATTGTTGTGAGGTGGACTTATATTTTTATCTAGAGCTCATATGATTTATATACAGTCTCTGCCACTGTAAGAGGTAGAGGAGGAGTGTACATAATGTTTTTCCGTTCATGTCAAGATAGAGATTTGTGTTTGTTACAGAAATCATTgggttgtgtgtttgttttttaattttattatttttttctcttgaagGCCACTTAATTGATACGATGAAaggttttaattattgtaaaagagagaaaaactgtttttaaaaaaactcagGTAAGATTTGATTAATCCAGCATGTTAAATTATATCCCACTGGCGGGAAAGAAAAGTGTCATGGGTGCAATATGTGTAGATTCACTTCTCTAGGGGTTTCCTCGGGAATGAAATCACGTGGACGTCTGTCATAACCTCATGTAGAATAGCGAGAGAGCGTGTCTGGTGCTATCAACTCGCTCATAGCACTAATACAGTATTAGACCTGTTTCTGTGTAATGTACTGTATTACATTGTTAAATTCTCACGATTATATTGTGTTGGCGTAATTCATAGTAACTACAATTCCTCTGAGAGAGAACAGGAACACTAGGGTTAGTTTTACCGCCAGGTGTTGCGCACCGTTTGAAAAGGTCTGAACACAAGTATTGTGAACACTCTGTTGTTTGCCATCTTGTAAACGCACTACTAAGTGGCTCTAATGGCTCAGTCGTCGATGGTTTGTGACACAATGGCTGACAAATGAAATGCTTGCACTATGTTGTTCCACCAGCcataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94902 lncRNA downstream 197756 14385604 ~ 14422900 (-) False LOC122350784
TU94714 lncRNA downstream 322066 14298291 ~ 14298590 (-) True G63997
TU94694 lncRNA downstream 350893 14268604 ~ 14269763 (-) True G63981
TU94690 lncRNA downstream 354613 14265726 ~ 14266043 (-) True G63980
TU94689 lncRNA downstream 355021 14265172 ~ 14265635 (-) True G63979
TU95018 lncRNA upstream 143917 14768973 ~ 14769271 (-) True G64223
TU95022 lncRNA upstream 153842 14778898 ~ 14779364 (-) True G64227
TU95038 lncRNA upstream 213325 14838381 ~ 14838616 (-) True G64236
TU95040 lncRNA upstream 215467 14840523 ~ 14840766 (-) True G64238
TU95030 lncRNA upstream 240742 14865798 ~ 14869687 (-) False G64229
XM_043246722.1 mRNA downstream 127238 14455427 ~ 14493418 (-) True dock8
XM_043246723.1 mRNA downstream 135421 14455427 ~ 14485235 (-) False dock8
XM_043247496.1 mRNA downstream 165413 14385600 ~ 14455243 (-) True LOC122350784
XM_043247806.1 mRNA downstream 334810 14273536 ~ 14285846 (-) True ercc6l2
XM_043247237.1 mRNA downstream 361613 14225356 ~ 14259043 (-) False slc20a2
XM_043246683.1 mRNA upstream 4766 14629822 ~ 14635444 (-) True p2rx7
XM_043247966.1 mRNA upstream 13507 14638563 ~ 14640033 (-) True gstt1a
XM_043247124.1 mRNA upstream 39763 14664819 ~ 14670406 (-) False smarcb1a
XM_043247123.1 mRNA upstream 39763 14664819 ~ 14670406 (-) True smarcb1a
XM_043247037.1 mRNA upstream 46669 14671725 ~ 14693600 (-) False ralgds
TU94636 other downstream 757406 13809428 ~ 13863250 (-) True G63933
XR_006251575.1 other downstream 2257561 12351246 ~ 12363095 (-) False kcnq2a
TU93842 other downstream 2356123 12263694 ~ 12264533 (-) True G63385
unassigned_transcript_1295 other downstream 2823454 11797130 ~ 11797202 (-) True trnaf-gaa_1
TU93692 other downstream 2841405 11778271 ~ 11779251 (-) True G63274
XR_006251614.1 other upstream 99152 14724208 ~ 14731391 (-) False slc20a1a
TU95023 other upstream 154475 14779531 ~ 14781710 (-) True G64228
TU95181 other upstream 658805 15283861 ~ 15284130 (-) True G64353
XR_006251609.1 other upstream 1024170 15649226 ~ 15700896 (-) False mvb12bb
XR_006251608.1 other upstream 1031863 15656919 ~ 15700896 (-) False mvb12bb

Expression Profile