RNA id: XM_043247124.1


Basic Information

Item Value
RNA id XM_043247124.1
length 1517
RNA type mRNA
GC content 0.48
exon number 9
gene id smarcb1a
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 14664819 ~ 14670406 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTTCTAGCCACTTCCGGCGCTTAGCTAATACGCATGATCAACTGAACGGGTCGCGCTAACGTTCAACATGGCGTTAAGCAAAACATACGGACAGAAACCTATTAAATTCCAACTGGAGGAGGATGGAGAATTTTACATGATTGGATCAGAGGTGGGGAATTACTTGCGTATGTTCAGAGGCTCCTTATATAAGCGCTACCCATCGCTCTCAAGAAGACTAGCGACGGTGGAAGAGAGGAAGAAGATAGTAGCATCATCTCACGCCACCAGTGTGACGCTGCTGAAAGCCTCCGAAGTCGAGGAGATATTTGAGGGGCATGATGAGAAGTACAAGGCCGTGTCCATCAGCACTGAACCTCCAGCCTATCTCAGggAGCAGAAAGCCAAGAGAAACAGCCAGTGGGTGCCCACTCTTCCCAACAGTTCACATCACTTGGACGCTGTGCCTTGCTCCACCACCATTAACCGCAATCGAATGGGACGTGACAAAAAAAGGACCTTCCCGCTCTGCTTTGACGATCATGACCCTGCTGTTATCCACGAGAACGCGACTCAGCCTGAGATCCTGGTGCCCATCCGGCTGGACATGGAGATTGACGGACAGAAGCTGCGTGATGCTTTCACGTGGAACATGAATGAGAAGCTGATGACTCCGGAGATGTTTGCTGAAATCCTCTGCGACGATCTGGATCTGAGCCCACTGACCTTTGTTCCAGCCATCGCCTCGGCCATCAGACAGCAGATAGAGTCTTACCCCACAGACAGCATACTGGATGAGCAGATGGACCAGAGAGTCATCATCAAGtTAAACATCCATGTTGGGAACATATCTCTGGTAGACCAGTTTGAATGGGACATGTCTGAGAAGGAGAACTCTCCTGAGAAGTTTGCTCTGAAGCTGTGCTCTGAACTGGGCTTGGGAGGAGAGTTTGTCACCACTATCGCATACAGCATACGCGGCCAGCTCAGCTGGCATCAGAGGACCTACGCCTTCAGTGAGAACCCTCTTCCCACGGTGGAGATTGCCATCCGGAACACAGGTGATGCTGACCAGTGGTGTCCACTGCTGGAGACACTGACAGATGCTGAGATGGAGAAGAAGATCAGGGACCAGGACAGAAACACAAGGCGAATGAGACGACTTGCAAACACAGCCCCAGCATGGTGAAAATATCAGCCCCCTCCCACAACTATGTAAATCTGAAGAGGCAAATACCAATAGAGCTACAACCCAGCGTTACTGACATAAAAACATAGAGACATTCCACTGGCCAGTCCAGATCAGAGTAACATACTGTAACctaaactaaaacaacattGGTTCTAGTCTGGCCTAGTCAAAACCCATGTCGTGACCTGCCCCCGTACCCAGTATCTGTCATCTTGGAGACAGACCATCTCTGTCTTGAAATGTTAAGAAGATTTTATGGTATctttatttgtcttgttttgtgtttgtgtatagaTGCCATTTTGTAAAcataatgtgcttttaaataaaattaagattaagaaA

Function

GO:

id name namespace
GO:0006337 nucleosome disassembly biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0043044 ATP-dependent chromatin remodeling biological_process
GO:0044772 mitotic cell cycle phase transition biological_process
GO:0008285 negative regulation of cell population proliferation biological_process
GO:0006281 DNA repair biological_process
GO:0000228 nuclear chromosome cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94902 lncRNA downstream 241919 14385604 ~ 14422900 (-) False LOC122350784
TU94714 lncRNA downstream 366229 14298291 ~ 14298590 (-) True G63997
TU94694 lncRNA downstream 395056 14268604 ~ 14269763 (-) True G63981
TU94690 lncRNA downstream 398776 14265726 ~ 14266043 (-) True G63980
TU94689 lncRNA downstream 399184 14265172 ~ 14265635 (-) True G63979
TU95018 lncRNA upstream 98567 14768973 ~ 14769271 (-) True G64223
TU95022 lncRNA upstream 108492 14778898 ~ 14779364 (-) True G64227
TU95038 lncRNA upstream 167975 14838381 ~ 14838616 (-) True G64236
TU95040 lncRNA upstream 170117 14840523 ~ 14840766 (-) True G64238
TU95030 lncRNA upstream 195392 14865798 ~ 14869687 (-) False G64229
XM_043247966.1 mRNA downstream 24786 14638563 ~ 14640033 (-) True gstt1a
XM_043246683.1 mRNA downstream 29375 14629822 ~ 14635444 (-) True p2rx7
XM_043246687.1 mRNA downstream 39763 14620656 ~ 14625056 (-) True gucd1
XM_043246722.1 mRNA downstream 171401 14455427 ~ 14493418 (-) True dock8
XM_043246723.1 mRNA downstream 179584 14455427 ~ 14485235 (-) False dock8
XM_043247037.1 mRNA upstream 1319 14671725 ~ 14693600 (-) False ralgds
XM_043247036.1 mRNA upstream 1319 14671725 ~ 14691048 (-) True ralgds
XM_043247035.1 mRNA upstream 1319 14671725 ~ 14687450 (-) False ralgds
XM_043247034.1 mRNA upstream 37456 14707862 ~ 14722945 (-) True snrnp200
XM_043247403.1 mRNA upstream 53306 14723712 ~ 14731388 (-) True slc20a1a
TU94636 other downstream 801569 13809428 ~ 13863250 (-) True G63933
XR_006251575.1 other downstream 2301724 12351246 ~ 12363095 (-) False kcnq2a
TU93842 other downstream 2400286 12263694 ~ 12264533 (-) True G63385
unassigned_transcript_1295 other downstream 2867617 11797130 ~ 11797202 (-) True trnaf-gaa_1
TU93692 other downstream 2885568 11778271 ~ 11779251 (-) True G63274
XR_006251614.1 other upstream 53802 14724208 ~ 14731391 (-) False slc20a1a
TU95023 other upstream 109125 14779531 ~ 14781710 (-) True G64228
TU95181 other upstream 613455 15283861 ~ 15284130 (-) True G64353
XR_006251609.1 other upstream 978820 15649226 ~ 15700896 (-) False mvb12bb
XR_006251608.1 other upstream 986513 15656919 ~ 15700896 (-) False mvb12bb

Expression Profile