RNA id: XM_043247403.1


Basic Information

Item Value
RNA id XM_043247403.1
length 2790
RNA type mRNA
GC content 0.48
exon number 11
gene id slc20a1a
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 14723712 ~ 14731391 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gACAGGACTGAGCTACAGTTAGGAGAGTTGTGGAGTTAAAGACTAAGAAAGCTTTCAAGCTCATATTTACCTTGTGCGTTTTACACAGAAACTGAGCGTTTggttattaatcattttattggcGCCACAGACGATCAAGCAGAAGTCATTCAGTGCATTTGaatgaaCCGTCGATCACTACTAAGATCTAGTCCACAATGGATGTCTCTGTCTGTGTAGCCACCCAAAGCCAATGCAAAGACCTTACCCTTATTAGTATATGTAGCTaacagttgcttttttttacttcttgcTACTGTCATTTGTGTTTGTAGAGATAGAGAGGGATCCGACTGTTTGATTTTGAACTTGTCTTCTAATtactttgaatatttatttatttattaagaagaAATACCTCAATAATCCAACACAGGTTGATTCGCAGTAGGCCAGAAGTGCATTTAATGCAGCAATGGAATCCACTACACTAGCATCCCTAGCAACTGTTACAATGCTAACGGCGGCCTCACAGACGGACATGTCTGATGTTCTCTGGCTGCTGGTGCTGGGCTTCGTCATCGCTTTCATCCTGGCGTTCTCTGTGGGCGCCAACGATGTAGCCAATTCGTTCGGTACAGCAGTGGGCTCTGGGGTAGTGACCCTGCGCCAGGCCTGCATCCTGGCCACCATCTTTGAGACAGTGGGTGCCATGCTTTTGGGGGCCAAAGTCAGCGAGACTATCCGTTCGGGTATCATCGATGTTCACATGTACAACGGCTCAGAGGCTGTGCTGATGGCTGGCTCTATCAGCGCCATGTTTGGATCTGCCGTTTGGCAGCTCGCAGCTTCGTTCTTGAAACTCCCCATCTCTGGAACGCACTGCATTGTGGGCGCCACAATCGGCTTTTCCATGGTTGCCAGAGGTCATCAGGGGGTGAAATGGCTGGAATTGCTTCGCATTGTTGCTTCTTGGTTTTTGTCACCTCTTCTCTCCGGGATCATGTCTGCCATTCTCTTCTACTTTGTCCGCAAGTTCATCTTGAATAAGGAAGATCCAGTACCCAATGGTTTAAGAGCATTACCAGTTTTCTATGCCGTTACTATGGGAATCAATCTGTTCTCCATCATGTTTACTGGAGCACCAATGTTAGGATTTGACAGGATACCATGGTGGGGTACTCTGCTGATCTCACTGGGCTGTGCTCTGCTTACTGCTGCGGTGGTCTGGTTCGTTGTCTGTCCACAGTTAAAGAAGaagataaaaaGTGAGAATATTGCCGACACTAGTGGGACACAGCTGATTGAGAAGAGGCCATCCTCAAACGGCCCCGTGGCCCATCCTGCCTCACCTCGAAGCTACTCTCCTGTCCCACAGACACCCCCTGCTGACAGCAACAAGGTGGCCTTTGACATCGGAGGTTCAGCAGAAACCGACCTGGACAGCAAAGATTTTGACACCAAAGATTTGGATTGCAGTCACGTTTTAAATGGCAGTGCTGGGATTGCCATACCAGACTTGAGCGGAGGCCAGTTTCACACCGTACACAAAGACTCTGGAATCTACAAGGATCTACTTCACAAACTTCACCTGGCCAAGGTGGGCGAATGCATGGGAGAGACCGGAGAGAAACCCATCCGCCGCAACAACAGTTACACCTCTTACACCATGGCCATCTACGGAATACACGGGTCGTTGAAGGAGGGCGAGGGAAGCCGGACTGGACTGGATGGAGAGAAAAGGCGCTCGCGGTACGACAGCTATAACAGCTACTGCACTGCGGTGGCCGATGGAGAAGCCGCCGCAGGAGACGGAGCTCTGGAAGTGGAGATGGGAGACGAAAACGTCGGAGGAGACTCGGTGGAAGAGGAAATAGATGAGCTTGAAATAGACAAGCCAGAGGTGTCCACGCTCTTCCAGTTCCTGCAGATTCTCACTGCCTGCTTTGGATCGTTTGCGCACGGGGGGAATGACGTTAGTAATGCGATTGGTCCTCTTGTTGCACTCTGGCTGATCTACGACAGCGCTTCTGTAGCACCCAGTGCTCCCACACCAATTTGGTTGCTCCTGTATGGAGGAGTGGGTATCTGTACAGGGCTCTGGATTTGGGGTCGGCGGGTCATACAAACCATGGGCAAAGACCTAACTCCCATCACTCCTTCCAGCGGATTTAGCATCGAGCTCGCCTCTGCTGTAACTGTAGTTGTCGCTTCCAACATCGGACTCCCAGTTAGCACCACTCACTGCAAGGTGGGATCCGTGGTGTCGGTTGGCTGGCTCCGCTCCAGGAAGGCCGTTGATTGGCGTCTGTTCCGGAATATCTTTATCGCTTGGTTTGTGACCGTGCCAATTTCTGGTCTCATCAGTGCTGCTATAATGGCGCTCTTCTATTACGTTATATTGCCTCTGACCTAATGTTTTATAGCAAACCATTTACTCCTTGTAAATAATTACACTTTGGGGCCTCGACTATGTAACGGCCCTCCGCCCCTGTCCCATCATATGTACTGTACATAGCAAATCAAGGACTGTGTATGTTTGCACATCACACTCATACTCTGTGATTTTTGTACATGTTTAAGGTGCTTAATAGTGTTAGGAGATAATTTTGTAGCCATTAAATGCGTgagtgtttatttagttttgggacctcacatttttgtaaagaaaaatattgttaGATTAGACTAaaattttgtttcagtttttggcAATGCAAATGCATACTCTGAGCTGAAaggcagtattttatttataaaacaatatgtgtATACTTGCatgacatttgaaataaatcatgtttctgctga

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006817 phosphate ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015293 symporter activity molecular_function
GO:0005315 inorganic phosphate transmembrane transporter activity molecular_function

KEGG:

id description
K14640 SLC20A, PIT; solute carrier family 20 (sodium-dependent phosphate transporter)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94902 lncRNA downstream 300812 14385604 ~ 14422900 (-) False LOC122350784
TU94714 lncRNA downstream 425122 14298291 ~ 14298590 (-) True G63997
TU94694 lncRNA downstream 453949 14268604 ~ 14269763 (-) True G63981
TU94690 lncRNA downstream 457669 14265726 ~ 14266043 (-) True G63980
TU94689 lncRNA downstream 458077 14265172 ~ 14265635 (-) True G63979
TU95018 lncRNA upstream 37585 14768973 ~ 14769271 (-) True G64223
TU95022 lncRNA upstream 47510 14778898 ~ 14779364 (-) True G64227
TU95038 lncRNA upstream 106993 14838381 ~ 14838616 (-) True G64236
TU95040 lncRNA upstream 109135 14840523 ~ 14840766 (-) True G64238
TU95030 lncRNA upstream 134410 14865798 ~ 14869687 (-) False G64229
XM_043247034.1 mRNA downstream 767 14707862 ~ 14722945 (-) True snrnp200
XM_043247037.1 mRNA downstream 30112 14671725 ~ 14693600 (-) False ralgds
XM_043247036.1 mRNA downstream 32664 14671725 ~ 14691048 (-) True ralgds
XM_043247035.1 mRNA downstream 36262 14671725 ~ 14687450 (-) False ralgds
XM_043247124.1 mRNA downstream 53306 14664819 ~ 14670406 (-) False smarcb1a
XM_043246745.1 mRNA upstream 9921 14741309 ~ 14758651 (-) True vgll4l
XM_043247974.1 mRNA upstream 107376 14838764 ~ 14840345 (-) True gadd45ga
XM_043247621.1 mRNA upstream 111106 14842494 ~ 14847964 (-) True creb3l3l
XM_043246235.1 mRNA upstream 117118 14848506 ~ 14858964 (-) False nim1ka
XM_043246236.1 mRNA upstream 117118 14848506 ~ 14858249 (-) True nim1ka
TU94636 other downstream 860462 13809428 ~ 13863250 (-) True G63933
XR_006251575.1 other downstream 2360617 12351246 ~ 12363095 (-) False kcnq2a
TU93842 other downstream 2459179 12263694 ~ 12264533 (-) True G63385
unassigned_transcript_1295 other downstream 2926510 11797130 ~ 11797202 (-) True trnaf-gaa_1
TU93692 other downstream 2944461 11778271 ~ 11779251 (-) True G63274
TU95023 other upstream 48143 14779531 ~ 14781710 (-) True G64228
TU95181 other upstream 552473 15283861 ~ 15284130 (-) True G64353
XR_006251609.1 other upstream 917838 15649226 ~ 15700896 (-) False mvb12bb
XR_006251608.1 other upstream 925531 15656919 ~ 15700896 (-) False mvb12bb
TU95424 other upstream 1676446 16407834 ~ 16409664 (-) False LOC122350093

Expression Profile