CI01000013_06817434_06826090 (RIC8B)


Basic Information

Item Value
gene id CI01000013_06817434_06826090
gene name RIC8B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 6817434 ~ 6826090 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_06817434_06826090.mRNA
AAGAAGGTGAACGGCCAGTGTTTCTAAGTGAACGGCAAAAGCAACATTCAGAGATGAGTTTAAGTGCTATTCTATCAGAGATCGACGGTGGAAATGACAAGGGGGTTGAAAAGCTTTTGCAGAAATATAACACAGAGAACAGCCACACGTTCGCCTTTGACCACAAAGAGGAGGATGCACGCATTGTGAGTAACAGATTTATGGTCTATTTTGTTTTGTATCTCAGTATGAAGTTGTGTCAGGGTCTTCTTACAGTCCTCCGTCGGTCAAATCTTCCACTTTGCCAAAGCACCTGCCTGGAGACCCTGCGCATCCTGTCCAGAGACAAGCGTGTACTTGGACCCGTAGCCACCAGAGAGGGCATCCTCACTCTAGCAGGGCTGGCCCGGATCCGTGTGGCGGGACACGACGGAGAGCCGTTAGAAGAGGCGCAGTCAGCAGAGGAGGAGAGGGTAGTGGTGGAGGCCCTTAAGTGCCTGTGCAACGTGGTGTTCAACAGCGTGTCGGCACAGCAGGTGGGAGCTGACTTGCAGTTGGCGGAGGGCCTGTGTGCCTGCTTGCATTCGGTCAGCTCGTCCCATCATGAGGTGGGCCTGTTCTCACTTCGCCTGCTGTTTCTGCTTTCCGCCCTGCGAACGGATGTGCGTAGCACGCTTCGGAAGGAGGTGGGTGCAGTGAGGCTGCTCACTAACGTGCTGGAACGCACCCTCGACGTGCGTTGGGTGGGGCCATATGAGGCTGCGCCCCCTGATCCAGAAGCCCCGCCCATTTCACTAGAGAACAATGAGCGTGCCATGGAAGCCCTTAAAGCTCTGTTCAACATCACTATGTCTGATTCGAGTGATGAGGACAGTGACCACCAGCTTCGGCTCATTGCAGGCATCATGAGACATCTCCTAATGCTGAAGACACACTCTGAAGATAAAACAGAGGAGGCTCACAGTCATGCCATAAATCTCCTGAGTAACCTTCCCGTGCAGTGCCTGGATGTTCTGATAGATGTCCCTGTCCAAGGTGGGATGGAAAAATATGGTGGGAAGAACATGGACACAGTGCAGATGCTGCTAGATTTTATGGAAAAGAGGATAGACAAGGGTTCCAACTATAAAGAAGGCTTGACACCTGTGCTGAGTCTGATGACCGAGAGCTCTAGATACCACAGGGACATCCGCAGATACCTCAAGACCCAGGTGTTGCCTCCCTTGAAGGACGTGAAGGAAAGGCCGGAAATCGGCTGCACCGTTCGCAACAAACTGGTGCGTCTCATGACTCATATAGACATGGCAGTGAAACAGGGGGCTGCTGAGTTCCTTTTTGTCCTCTGCAAGGAGAGCGTGGATAATCTGTTGAAGTACACTGGTTACGGCAATGCTGCGGGGCTGTTAATGGCACGAGGGTTGCTGGCCGGAGGCAGAGGAGAGACACAGTATTCATCTGATGAAGACTCGGACACTGACGAATACAAGTCAGCCAAACCTTTCATTAACCCCATTACAGGTCACATAGAGCACCCAATGCCAAACCCCTTTGACGAGATGACAGAGGAGCAGAAGGAATATGAAGCTCAGAAGCTTGTCAGTATGATTGATGAATTATCAAG

Function

symbol description
ric8b Predicted to enable G-protein alpha-subunit binding activity and guanyl-nucleotide exchange factor activity. Acts upstream of or within pigment cell development. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human RIC8B (RIC8 guanine nucleotide exchange factor B).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_06817434_06826090.mRNA True 1600 mRNA 0.52 9 6817434 6826090

Neighbor

gene id symbol gene type direction distance location
CI01000013_06795895_06815354 RFX4 coding upstream 1237 6795895 ~ 6816197 (+)
CI01000013_06765502_06790599 POLR3B coding upstream 26511 6765502 ~ 6790923 (+)
CI01000013_06761450_06763720 NA coding upstream 53171 6761037 ~ 6764263 (+)
CI01000013_06737670_06759152 PPFIBP1B, PPFIBP1 coding upstream 58174 6737670 ~ 6759260 (+)
CI01000013_06727503_06728691 NA coding upstream 88421 6727503 ~ 6729013 (+)
CI01000013_06850663_06853811 TMEM263 coding downstream 24573 6850663 ~ 6855001 (+)
CI01000013_06915872_06917002 MTERF2 coding downstream 89423 6915513 ~ 6918255 (+)
CI01000013_06941851_07005817 BTBD11A, BTBD11B, BTBD11 coding downstream 115761 6941851 ~ 7005817 (+)
CI01000013_07012984_07019146 MLC1 coding downstream 186633 7012723 ~ 7019146 (+)
CI01000013_07023379_07027997 PANX2 coding downstream 197004 7023094 ~ 7028441 (+)
G81870 NA non-coding upstream 130305 6683582 ~ 6687129 (+)
G81862 NA non-coding upstream 146804 6666733 ~ 6670630 (+)
G81864 NA non-coding upstream 163164 6653940 ~ 6654270 (+)
G81843 NA non-coding upstream 172516 6615518 ~ 6644918 (+)
G81790 NA non-coding upstream 365502 6451725 ~ 6451932 (+)
G81904 NA non-coding downstream 37112 6863202 ~ 6863421 (+)
G81918 NA non-coding downstream 55866 6881956 ~ 6882224 (+)
G81920 NA non-coding downstream 61403 6887493 ~ 6887821 (+)
G81883 NA non-coding downstream 78966 6905056 ~ 6905344 (+)
G81939 NA non-coding downstream 161803 6987893 ~ 7085501 (+)
CI01000013_06076169_06080164 NA other upstream 735067 6075400 ~ 6081684 (+)
CI01000013_06050285_06059640 NA other upstream 757938 6049864 ~ 6060269 (+)
G80845 NA other upstream 1981202 4835078 ~ 4836232 (+)
CI01000013_04051081_04064651 NA other upstream 2751605 4050837 ~ 4065829 (+)
G80062 NA other upstream 3232650 3584008 ~ 3584784 (+)
G81994 NA other downstream 509855 7335945 ~ 7338239 (+)
G82168 NA other downstream 1202248 8028338 ~ 8041343 (+)
G82581 NA other downstream 2503239 9329329 ~ 9334948 (+)
G84005 NA other downstream 2775521 9601611 ~ 9602235 (+)
G84194 NA other downstream 3204518 10030608 ~ 10036953 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location