G82168


Basic Information

Item Value
gene id G82168
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 8028338 ~ 8041343 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU93521
CGCAGGTGCTGGTCTGGTCGAGGCATAGGTTCGGTGAGGCGCAGATTGAAATCCTGACAGCGGAGCAGGTTTTCCCTGTAATACTGGATGAGCGCATACACACTGGGGAAGTGCAGGTTGTCTGTGAGGAAATAGACGGTGTGACCTCCTTCTATGCAGGAACGGATTCGACAATGCTGGACTCGTCCACTGCGCCAGAATGAGAGGGTGCAATCATTGACGAAGGTGTCGCTCTCTCGCACCAGAAATGTTCCGTCAACTCCACCTGAATCTGCACAATATTCTTGCAGAAGTCTCTCGGCTGTCTGTCTGCCCTCTGACATCCGCCCGTGAAACCAGGGCTCTGCCTGATGAAGCTCTGTACCTCCCTGGGACGACTTTCCAGCGTCCTCATCTAGTTCATTCTCCTCAGCATAATACAAAGTCTTATTCTCGATCACACAGTAGTGCTTGTACCATCTCTCATCTATTGGATCCCAGATGAAGAGCTCTCCCTGCTTATCTCCTTTCCGTAGGTCCTTTTTGCCAAAATTCTCATCTATATTTAGTTTCTTGTGCTTGATGATGATCTTGCCCTTCAGCTGGCTTGGTGATGGCAGTTGTTCTGCTTCTGGTTCCAGTGGCTCCATCAGAAGCTTGTCTTGGAAAACATCTTTGAACACCTGAGCCATCATTTTCTGTTGCTTGATATCACAGTGTTCTTCTATGGACAGCACTACAGGATACTCAGATGTTGCGAAAGCATGATCATTGATGGCCTTAACCACATCCTTAAACTTTATCTTGGAGGTTCTGGTCCATCCGTGGTATATAATAGGTTCATCAGGACCATTCCAGCAGTCCAACTCAACACAGCGGCAGCCCAGCCTCAGGCAGCGCACATAAGCTTCTGTTGAGGACTCACTGCGCAACTGATCTCCAGTCAAATATGTGTTGTGAGAAGAGTTGATCCAGTAGTGAGACAGAGGATTGTTCATGTCCAGTGGGCAAATCTCTGAGAACTTCTCATCCCAAATTGAGTTTTCTTTGGAGAAGAGAAAACAGAGGAACTCTTCAACAGTAAAGGCTGGATCATTAGTCTTCCTCATGGTGTCATCGATAAAGATCGTCATCAGCTCTCGGACTTGATTCAGATTGTTGGCCCAAGTCTCTCTTTGATGATATAAAAGGAATCTTTGAAAATCGCAGAGTTGAATAGGCTGGTCGTTGTTACCCATGATGAAAGCACATGACTCCTTTTTAAACTCCTCTAGAATCATCTTTTGGTTTTCGAATATCAAAAGATTGTAGAATTTGTGAAATTGCTCAAAATCCAGAACTTCTTTTTTCGCTCCCACCACCGAAATTCTGTCCTTCAAAAAACGTCCACCTGGTACTTTAAAGTTCATTTGTGGCAAAAGAGACTTGAGCTCTTTCAGGGTGATGCTATTTTTCTTTGTCTTATCAACCGAGTACATCTGCTTCCTCAGCCAACTCTCTATAATCTCTGGTGTGTGAGCCGCCAGTGTCTCCTGTCTGAGTAACTCCAGTCCTGTCAGCCATTTTTCTGCATCCTCCACCGAATCAGCCCCCAGACTGAGAGTGTTGAGAACAAACTGAGAGCCGTAGAATATGGTAAAGCATGTGTTTGGATCTGTATTTTTATCCTTGCTGTCCTTGAATCGATCAAATTCTTTGGAGTTTTTTCCTGGTCGTACTTCCCGGATCTCAAAAATGTCCAACACTCCCTCTGTCTTGTCGGCGGTGCGCGTCCAGGCAACCTGTCGCGTCTCCATGATGACCTGTACGGTAAGCCTCTCCATCCTCTGTCTGTACACTGTCATCACTATCCCCATCTCCAAGTCCCGCTTAATGAGACTCTTCTTGTACTCAGTCAGGTCTCCCTGCTGAGTGCGGCCTGCCATCTCTGCCTTTGGCCACACACCAAGTTTAGAGAAGAAAATCAATGACCACTTCGAAAACCACCTGCTGTAACCTAGCTAATTCTCATTTTTAAAAATAAAAAATAGCCTAATGCAGTATTGAAAACCCTCTATGATCAGACTAGTCACAATGTGGTCAGTTCCTCTATTCGCTAAACACAAGGAAGTGAAGAGAACATTAAGAGAATAAAAAAAAAAAAACCGGAAGCAAAATTATCTATGCAAAATCCCCAGGGAACACAGGGCGATGTGTGTACCACTCTGTCAAACTTTTGTGCCTTTGTGTCAGTTTAAAATACGCCAAAAAACGTGACATCTGATCTGAATACAGGAGAAGCGTTTATTTCAGTGTGTAGTCAGGCTGCTTCAAGTCGCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU93521 True 2298 TUCP 0.45 18 8028338 8041343

Neighbor

gene id symbol gene type direction distance location
CI01000013_08013515_08013676 NA coding upstream 13572 8013515 ~ 8014766 (+)
CI01000013_07970614_07989626 CMIP coding upstream 38582 7970614 ~ 7989756 (+)
CI01000013_07929832_07935997 GAN coding upstream 92341 7929832 ~ 7935997 (+)
CI01000013_07791141_07802608 NA coding upstream 225628 7790704 ~ 7802710 (+)
CI01000013_07765924_07780475 NA coding upstream 247622 7764685 ~ 7780716 (+)
CI01000013_08066408_08071727 KLHL36 coding downstream 23866 8065209 ~ 8071972 (+)
CI01000013_08095012_08097899 CS012 coding downstream 53669 8095012 ~ 8098533 (+)
CI01000013_08101166_08105054 TMEM5 coding downstream 59823 8101166 ~ 8105214 (+)
CI01000013_08107786_08113703 NA coding downstream 65333 8106676 ~ 8113731 (+)
CI01000013_08139954_08212837 SRGAP1A, SRGAP1 coding downstream 98611 8139954 ~ 8212837 (+)
G82157 NA non-coding upstream 11972 8015253 ~ 8016366 (+)
G82339 NA non-coding upstream 75342 7952768 ~ 7952996 (+)
G82338 NA non-coding upstream 75683 7952441 ~ 7952655 (+)
G82337 NA non-coding upstream 76070 7951851 ~ 7952268 (+)
G82286 NA non-coding upstream 206327 7821700 ~ 7822011 (+)
G82184 NA non-coding downstream 33317 8074660 ~ 8077302 (+)
G82178 NA non-coding downstream 42235 8083578 ~ 8087016 (+)
G82162 NA non-coding downstream 187384 8228727 ~ 8230128 (+)
G82155 NA non-coding downstream 211370 8252713 ~ 8305402 (+)
CI01000013_08652173_08660558 NA non-coding downstream 567681 8652173 ~ 8661156 (+)
G81994 NA other upstream 690099 7335945 ~ 7338239 (+)
CI01000013_06076169_06080164 NA other upstream 1945971 6075400 ~ 6081684 (+)
CI01000013_06050285_06059640 NA other upstream 1968842 6049864 ~ 6060269 (+)
G80845 NA other upstream 3192106 4835078 ~ 4836232 (+)
CI01000013_04051081_04064651 NA other upstream 3962509 4050837 ~ 4065829 (+)
G82581 NA other downstream 1287986 9329329 ~ 9334948 (+)
G84005 NA other downstream 1560268 9601611 ~ 9602235 (+)
G84194 NA other downstream 1989265 10030608 ~ 10036953 (+)
G84215 NA other downstream 2035111 10076454 ~ 10079336 (+)
G84250 NA other downstream 2173784 10215127 ~ 10215962 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location