Gene
RNA
| Item | Value |
|---|---|
| gene id | G82162 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000013 |
| NCBI id | null |
| chromosome length | 12551977 |
| location | 8228727 ~ 8230128 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU93515 | True | 1283 | lncRNA | 0.39 | 2 | 8228727 | 8230128 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000013_08216673_08226743 | PARP12A, PARP12 | coding | upstream | 953 | 8216599 ~ 8227774 (+) |
| CI01000013_08139954_08212837 | SRGAP1A, SRGAP1 | coding | upstream | 15890 | 8139954 ~ 8212837 (+) |
| CI01000013_08107786_08113703 | NA | coding | upstream | 114996 | 8106676 ~ 8113731 (+) |
| CI01000013_08101166_08105054 | TMEM5 | coding | upstream | 123513 | 8101166 ~ 8105214 (+) |
| CI01000013_08095012_08097899 | CS012 | coding | upstream | 130194 | 8095012 ~ 8098533 (+) |
| CI01000013_08336335_08399543 | HIPK2 | coding | downstream | 106207 | 8336335 ~ 8399621 (+) |
| CI01000013_08402498_08414755 | NA | coding | downstream | 171674 | 8401802 ~ 8416190 (+) |
| CI01000013_08448494_08481411 | NA | coding | downstream | 217147 | 8447275 ~ 8482911 (+) |
| CI01000013_08485928_08493559 | NA | coding | downstream | 255273 | 8485401 ~ 8493623 (+) |
| CI01000013_08519555_08527531 | FAM107B | coding | downstream | 288982 | 8519110 ~ 8527711 (+) |
| G82178 | NA | non-coding | upstream | 141711 | 8083578 ~ 8087016 (+) |
| G82184 | NA | non-coding | upstream | 151425 | 8074660 ~ 8077302 (+) |
| G82146 | NA | non-coding | upstream | 168902 | 8011261 ~ 8059825 (+) |
| G82157 | NA | non-coding | upstream | 212361 | 8015253 ~ 8016366 (+) |
| G82339 | NA | non-coding | upstream | 275731 | 7952768 ~ 7952996 (+) |
| G82155 | NA | non-coding | downstream | 22585 | 8252713 ~ 8305402 (+) |
| CI01000013_08652173_08660558 | NA | non-coding | downstream | 378896 | 8652173 ~ 8661156 (+) |
| G82453 | NA | non-coding | downstream | 470488 | 8700616 ~ 8700839 (+) |
| G82503 | NA | non-coding | downstream | 603944 | 8834072 ~ 8846060 (+) |
| G82526 | NA | non-coding | downstream | 680269 | 8910397 ~ 8910626 (+) |
| G82168 | NA | other | upstream | 187384 | 8028338 ~ 8041343 (+) |
| G81994 | NA | other | upstream | 890488 | 7335945 ~ 7338239 (+) |
| CI01000013_06076169_06080164 | NA | other | upstream | 2146360 | 6075400 ~ 6081684 (+) |
| CI01000013_06050285_06059640 | NA | other | upstream | 2169231 | 6049864 ~ 6060269 (+) |
| G80845 | NA | other | upstream | 3392495 | 4835078 ~ 4836232 (+) |
| G82581 | NA | other | downstream | 1099201 | 9329329 ~ 9334948 (+) |
| G84005 | NA | other | downstream | 1371483 | 9601611 ~ 9602235 (+) |
| G84194 | NA | other | downstream | 1800480 | 10030608 ~ 10036953 (+) |
| G84215 | NA | other | downstream | 1846326 | 10076454 ~ 10079336 (+) |
| G84250 | NA | other | downstream | 1984999 | 10215127 ~ 10215962 (+) |
