G82184


Basic Information

Item Value
gene id G82184
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 8074660 ~ 8077302 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU93537
ATTTCGCGTTTCAAATTCGCGTCCACAAATTCAGTGGTTCAAATTTCAACATTTCACATCCGGGAACTGCAGGAAAAGCAGTAGAGTACCGAGCATAACCTCCATCTGCTGTTAGTCGATCTTACCAACAGGTGGTGCAAGCGCGTCTTGACGAAGAGCAGAGTAATGGGTAGAGAGAGTCATTCATTCATTAAAATGGATTTACATTAATGGAGCTAGCGGTAAGTGCATGTGTGATGATTATCAGGGCCAGTATATAAAAGCTGATAAAGCTGTTGTCATCTACTGTAATTACGACATGGCATGAATACAGCATAAGTAGGCCTAACCAAACATCATTTGATCAATAACTTGGTAGACAATCATATGATGTTCATGCACCTGATTAACAGCAGGTGGAATTTTGGCCACAGATAGCAATCTCTCTAGTTGTTCGATTGTGAAGTTAGACACACCGATACTTTTCACCTTTCCCGTGGCTTTAAGAGCTTCCATTCCCTGAAATAGACGGCAGCACACTCTAAAGACTTTGACATCGTTAGCAAAGTATTAACATTATATGTTGAGTGTTAGCGGTTAGCATTACCTTCCAGACATCAACATAGTCTATGTTTGTTGTGAGCATCTTTCCATCCTTTTCTGGGAAAAGCTCATCGCCCATTTTCTGTAAGTTATTGTAAAGCAAACAATTAGTACTTTAACTTGAATACAAGAAATAAAGTTCAGTTAAGGATTAAAAATAGTAACTGATGCTAAGGCTATACATAATTAAAGCTTTTTTGATAACTGTGAGAAACTGAACACTCCAACAAACTATGTTTGGGAGGCTACTAATAAACTTGTATGTTGATATTGATATTGATTTTGATATTGATATGTACAGAGGTAAAAGGAGGCTATTTGGGAACTTAAAGGGATAGTTCACCCAAAAATGAAAATTTTGTCATTATTTACTCACCCTCAGGTTGTTACAAATCTGTTTGAGTTTCTTTGTTCTGTTCAACACAAAAGAAGATATTTTGAAGAATTTTGGTAATCAGACAGTTGACTTTCATAGTAGGAAAAAAATACTATGGAAGTCAGTGGCTACTGTCAACTGTCTGATTGCCAACATTCTTCAAAATATCTTCTTTTGTGTTCAACAGAAGAAAGAAACTCATACAGGTTTGGAACAACATGAGGGTGAGTAAATTATTACAATTTTTACTTTGGGCTGAACTAAAATGGATTAATGACATTTATTTTAAACAAATTATATATATATGTGTGCATATACAGTGCCACTTGAAAGTTTGTGAACCCCTTGCAGAATCTGTGAAAATGTGAAAAATTTTAACAAAATAAAAGAGATAATACAAAATGCATGTTATTTTTTATTTAGTCCTGTCCTGATTAAGATATTTTACATAAAAGATGTTTACATATAATTCACAAGACAAAAAAATAGCTGAATTTATTAAAATTATATGTTAGCACATATATGTTTGAGGTCACTGATTCTTGTATTAGCTACCTTTAGTCCTACTGGAAAGTGCACTAGATACAGGTCCAGGTAGTCTAGCTGAAGGTCATTTAACGATTTATTTAAACAAACTGGAATGTCTTCAGGAGCATGGTGAGTACACCACAGCTGGAAAAAGAGGCAACGTTATTGCATGTTTGATGTTTTTGCTCCTTTTAAATGTGTCTACATTAATTTCACCTTAGATCACCAACACAACTTGAACTCACTTTACTGACTATGAACATGTCTTGGCGTCTGATGATGCCCTGCTGTATCTTGGACTGAATGGCCTTCCCCACCTCTGTCTCGATCCGGTAGCTGTAGGCTGTATCTATATGCCGATATCCAGCAGCGATCGCTGCCTCAGCTGCCCTTTGACACATATCTGGGCCAGTGGCCTGCACCCTCTGGCTTCCATGTCCCAAGTCCCAGTAGTGGCATGCATGTGCCATCATTTAGTTCAATCGTCCTAGGTTGTCCGGCTCTCTCCTCCATGTAAGAAAGATTTGTGCAGTAAGTAGCAGCTAAGTGGACTGACTTGTCTTTCCTGTCTTTTTCCTATCTTTATATTTCTAGCTCATATCTTCCTCTTTACAGTTTGAGCAGAACTGCCTTCTCTTTATCTTTGCAGTTAATCATTGAACTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU93537 True 2150 lncRNA 0.37 2 8074660 8077302

Neighbor

gene id symbol gene type direction distance location
CI01000013_08066408_08071727 KLHL36 coding upstream 2688 8065209 ~ 8071972 (+)
CI01000013_08013515_08013676 NA coding upstream 59894 8013515 ~ 8014766 (+)
CI01000013_07970614_07989626 CMIP coding upstream 84904 7970614 ~ 7989756 (+)
CI01000013_07929832_07935997 GAN coding upstream 138663 7929832 ~ 7935997 (+)
CI01000013_07791141_07802608 NA coding upstream 271950 7790704 ~ 7802710 (+)
CI01000013_08095012_08097899 CS012 coding downstream 17710 8095012 ~ 8098533 (+)
CI01000013_08101166_08105054 TMEM5 coding downstream 23864 8101166 ~ 8105214 (+)
CI01000013_08107786_08113703 NA coding downstream 29374 8106676 ~ 8113731 (+)
CI01000013_08139954_08212837 SRGAP1A, SRGAP1 coding downstream 62652 8139954 ~ 8212837 (+)
CI01000013_08216673_08226743 PARP12A, PARP12 coding downstream 139297 8216599 ~ 8227774 (+)
G82146 NA non-coding upstream 14835 8011261 ~ 8059825 (+)
G82157 NA non-coding upstream 58294 8015253 ~ 8016366 (+)
G82339 NA non-coding upstream 121664 7952768 ~ 7952996 (+)
G82338 NA non-coding upstream 122005 7952441 ~ 7952655 (+)
G82337 NA non-coding upstream 122392 7951851 ~ 7952268 (+)
G82178 NA non-coding downstream 6276 8083578 ~ 8087016 (+)
G82162 NA non-coding downstream 151425 8228727 ~ 8230128 (+)
G82155 NA non-coding downstream 175411 8252713 ~ 8305402 (+)
CI01000013_08652173_08660558 NA non-coding downstream 531722 8652173 ~ 8661156 (+)
G82453 NA non-coding downstream 623314 8700616 ~ 8700839 (+)
G82168 NA other upstream 33317 8028338 ~ 8041343 (+)
G81994 NA other upstream 736421 7335945 ~ 7338239 (+)
CI01000013_06076169_06080164 NA other upstream 1992293 6075400 ~ 6081684 (+)
CI01000013_06050285_06059640 NA other upstream 2015164 6049864 ~ 6060269 (+)
G80845 NA other upstream 3238428 4835078 ~ 4836232 (+)
G82581 NA other downstream 1252027 9329329 ~ 9334948 (+)
G84005 NA other downstream 1524309 9601611 ~ 9602235 (+)
G84194 NA other downstream 1953306 10030608 ~ 10036953 (+)
G84215 NA other downstream 1999152 10076454 ~ 10079336 (+)
G84250 NA other downstream 2137825 10215127 ~ 10215962 (+)

Expression


Co-expression Network