XLOC_008905 (si:dkey-77f5.4)


Basic Information

Item Value
gene id XLOC_008905
gene name si:dkey-77f5.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 1025308 ~ 1031511 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017591
AAACCGGCGCCGCGCTGTTTTCCATCTGTGATTcggctggagaaaggaacagggttgagaaacGCTCCACGTGCCAGACTGGTATAAAGATGGCGTTCATTAAAGAGGAGATTGAAGAAGTGCAGATTGGAGGAACATTCACAGTCGAACATGAAGATCctgaggaacaaacagGTCTGATAATGCCGAAAGAAGACAGAATGAGATTCGATCAGAGAGCAGACCTTCGAGTCAACACAAGCATTTACGCCAGAAAGAAGCCCTACACTTGTACTCAATGTGGAAAAGTTTTCGTGCAAAAGCGTTCTCTTAATGGCCACATAggaattcacaccggagagaggccgtacacttgccctcagtgtggaaagggTTTTTTATATAAGAATTCTCTCAGTATCCACACAAGAAATCACAGTAAAGACAAGCTTTTCACCTGCGGTCAGTGCGGAAAAGGATACAGTATAAAAGGAAACCTTGACATCCACATGAGATCTCACACTGAAGAGAAGCCGTACACCTGCCCTcactgtggaaagagttttgtTCGTAAAAACACTCTTCATGCCCAcgtgagaatccacactggagaaaagcttTTTGCTTGCCctcagtgtgaaaagagtttcTCTCTTCAAGGACAGCTCAAAATCCACATGAGGATACACCTTGAAACAAAGCCTTACAGCTGCTCTCAGTGCGGGAGGAGCTTTTACGATAAAAAATCTCTCGATGTCCACAcaaggattcacactggagagaagcctcacacttgccctcagtgtggaaagagtttcgttCATAAGCATTCGCTCCGAATCCATTCAAGATTTCACAGTGGACAGAGGCTTCTATCGTGCCAGGAGTGTGGAAGATGTTTCAGTATAAAGGCAAACCTTAAAgcccacatgagaactcacaccggagagaagctgGTTACTTGCggtcagtgtggaaagagtttcgccAATCAAAGCTACCTTACAacccacatgaggattcacaccggagagagacCTTTCGTCTGCAAAGAGTGTGGAAAGGGTTTCCATAAACGAGGAAACCTCACAGCCCACATGAggactcacaccggagagaagccttacAGCTGCAAAATATGTGAAGAGACGTTCAGATCAACACAAACGCTTAAAGGTCACATGAGCGTTCACACGGCTGAGAAATCTTCTCGTGTGGTTAGTCTGGAAGGAGTTTCAGATGTAAACTTGCAAGTGATCTCTGATAATGGTTCTGTGGGGACGCTTCTGCACGTCTCTGAAGCAAGTAACCTCAGTGGTGATGTGCAACGTCATGTTGAGGAGACATCAGGCCTAGCAAGCTTAAAAGTGCACCAGAAATAAAGCTGTGTCTACA

Function

symbol description
si:dkey-77f5.4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-70 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000097808

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017591 True 1374 mRNA 0.46 3 1025308 1031511

Neighbor

gene id symbol gene type direction distance location
XLOC_008904 znf1010 coding downstream 2872 1017437 ~ 1022436 (-)
XLOC_008903 NA coding downstream 16949 1007600 ~ 1008359 (-)
XLOC_008902 NA coding downstream 31721 986144 ~ 993587 (-)
XLOC_008901 alox5b.1 coding downstream 72417 942531 ~ 952891 (-)
XLOC_008900 si:dkey-77f5.14 coding downstream 101327 920298 ~ 923981 (-)
XLOC_008906 si:dkey-77f5.3 coding upstream 1732 1033243 ~ 1038193 (-)
XLOC_008907 aadac coding upstream 13863 1045374 ~ 1066269 (-)
XLOC_008908 NA coding upstream 108934 1140445 ~ 1143069 (-)
XLOC_008909 lxn coding upstream 148365 1179876 ~ 1198886 (-)
XLOC_008910 LO017713.1 coding upstream 290279 1321790 ~ 1321906 (-)
XLOC_008898 NA non-coding downstream 117001 877204 ~ 908307 (-)
XLOC_008899 NA non-coding downstream 124429 899089 ~ 900879 (-)
XLOC_008897 NA non-coding downstream 149323 875328 ~ 875985 (-)
XLOC_008927 AL954387.2 non-coding upstream 1234458 2265969 ~ 2266083 (-)
XLOC_008928 NA non-coding upstream 1292155 2323666 ~ 2328284 (-)
XLOC_008932 NA non-coding upstream 1567293 2598804 ~ 2611170 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location