XLOC_008955 (cog6)


Basic Information

Item Value
gene id XLOC_008955
gene name cog6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 3454529 ~ 3534705 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017672
TTCTAGCACTCTTTCTTTCCCCCATCACCCTGCACGACTCATTACGCGGAACTAAAGTCTCCAGCTCTTGTAGTGGCGGGACATTTTTGATCGTTACTCAAAACATCTTCCTGGAGGTTGACGTGGATGATGTTGAATATGGCAGAGACCAAAGCAGATCTGACAGCTGATGcttccaacagcagcaataataATGTGTCCTCACAGCCCAACAATCCGCTGTCCAGAAAACTGCACAAGATCCTGGAGACGCGACTCGACAATGACAAGGAGATGCTGGAAGCGTTGAAATCTCTGTCCGTGTTTTTCACTGAGAACAGCCTGAGAACCAGGAGGAACCTCCGAGGAGACATCGAGAGACGCAGCCTGTCCATCAATGAAGAGTTTGTGCGCATTTTTAAAGACGTGAAGGAGGAGCTGGAGAGCGTTCATGAAGACGTTCAAGCCATGAGCTCCTGCTGTGAAGAAATGACAAACAGGTTAAAGGCAGCCAAAGAGCAAACCCAGGACTTGATTGTGAAAACCAACAAACTTCAAGGAGAGAATCATCGGTTGGAGGTTCGGGCTCAGGTCGCTCAGGCGTTCCTGTCAAAGTTTCAGCTGTCGGCCGCTGAGATGGCAACGTTACGCTCGGCACGAGATGGGCCTATAACTGAGGACTTCTTCAGGGCGCTGAACCGTGTGAAGAACATCCATGAAGATGTGAAGGTCCTACTGAGAACCAACCAGCAAACAGCAGGGCTGGAGATTATGGAGCAGATGGCGGTGTTACAGGAGACGGCATACGAGCAGCTCTATCGCTGGGCACAGAACGAATGCAGAGGGTTGACTCAGGAAACATGTGATATTCCTCCTGTGTTGAGTCAAGCTATGGAGTCTCTCCAGGATCGGCCTGTTCTTTATAAGTACACACTGGATGAGTTTGGTACGGCGCGACGTTCTGCAGTAGTCCGAGGCTTTATTGATGCCCTGACCCGCGGAGGTCCAGGCGGCACCCCGAGACCCATAGAGATGCACTCTCACGACCCCATGAGGTATGTTGGGGACATGTTGGCCTGGCTCCACCAAGCCACAGCTTCAGAGAAGGAGCACCTGGAAGCCCTGCTCAAACAAGTGACTGTGCAGGGCGTTGAAGAAAACATGCAGGAAGTCGTAGGCCACATCACTGAAGGAGTGTGCAGACCTCTCAAGGTGCGAATCGAGCAGGTGATCATCGCAGAGCCCGGCGCGGTTCTTCTCTATAAACTCTCCAACCTGCTCAAGTTCTACCATCACACCATCAGtggcATCATGGGTACCAGTGTTTCCTCTCTGCTGATGACCATGGATGAGATGCACATGCTCAGCAAGAAGATGTTCTTCAACAGTCTCAGCCTTCACGCAAGTCGCCTTATGGATAAAGTAGAGCTTCCTCCTCCTGATCTGGGTCCCACTGCCTCACTGACTCAAACTCTGTCTCTGCTAAGAGAGGTTTTGGCATCCCATGATTCATCAGTTCTGCCTCTGGATGCCCGTCAGGCTGATTTTGCACAGGTGTTGTCCTGTATCCTCGACCCGCTGCTGCAGCTGTGCACAGTGTCAGCCAGCAACCTGGGCACTGCAGATATGGCCACCTACATGGTGAACTCCCTCTACATGATGAAGACCACGCTGGCGCTCTTCGAGTTCACAGATAAACGCTTGGAAATGCTGGAGTTTCAGATTGAGGCCCACCTGGACACTCTAATCAACGAGCAGGCGTCTTTTGTGCTGACCAGAGCAGCGCTGAGCCACATCTACAGCTGTGTCCAGCAACACACCGCAGATCAGGGTCCCTTGGCAAACCTCCCTGGCATGGACAGCACATCCTTAAAAACAGCCATGGTCCAGTTTGACCGTTATTTGGCCTCTCCTGATACACTTGTGATGCCGCAGCTCAACTTCCTGCTCAGCGCTGCTATCAAagaacAGATCTTCAGGCAGTCCACAGAGCTGGTGTGCGGTGCGTATGCAGAGGTGTACAAAGCTGTCACCAACCCTACAAACACCTATAAAGACGCAGAGTCAGTCCTGCACAGATCCCCACAGCAGGTACAAGCCCTGCTGTCCTGAAGCCAGAACGCACACTAACAAGTGAGGTGATGTCCAACACACTCAATGTTCTGGGTCTGACAGTGGATTCAGGACAGCAGGTCATGTTGGAGTGCTCTCAACTGGTGAAGGGGTGTTTTTTATGTATCGTTCTTACAGTTTAATGTCGATTATGTGAAACAAAGACGGTCTGCGTACAGAAATAAGTCTGGATTTCTCTGTggacagcatttttatttttcctccCCACATGGATGGAGATCCCCACTAGCAGGCCCGGGGGAAGCAAACTGCAGACtatatcattcacacacacacacacatattcacatgcactcaaatATACATACAGTCATTAGATTACGTACGCTGGGGCTTTTTCTTTCACAGCCACAGAGGCCTTGAATGAGTCAGGGTCAGTCTGTGATctggaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttataactgCATTAAAATACACTCTGAAGTTATCAAGTGTGTGTGTCAAGTTATTTATCGCTTCTTCTCAGATGATATTTGTTCTTGATtgatctgtccatccgtctgatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatcgtttgcatctatctatctatctatctatctatctgtctgtctgtctgtccgtccgtccgtccgtccgtccgtccgtccgtccgtccttccgtgtccatccatccatccatctgtgtccatccatccatccatccatccatccatccatccatccatccattgtttgcatctatctatctatctatctatctatctatctgtctgtctgtccgtccgtctgtccgtccgtccgtccgtccgtccatccatccatccatccatccatccatccatccatccatccatccatccatcgtttgcatctatctatatatctatctatctatctatctatctatctatctatctatctatctatctgtctgtctgtctgtctgtccgtctgtccgtctgtccgtctgttcgtccgtccgtccgtccgtccgtccgtccgtccgtccgtccgtccatccatatccatccatccatccatctgtgtccatctgtctgtctgtctgtctgtccgtccgtccgtccgtccgtccgtccatccatatcCATccgtgtccatccatccatccatctgtgtccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatctatccatctatccatctatctatctatctatctatctatctatctatctatctatctatctatctatctgcctgtctgtaTATGTCTATAtctgtctctctttttttccctttttaaatcatatttctcCCAAACTGCATCAGAATACACTACTAGTCTGTCTCGCGGCGTTCTCCTCTCAGCGTCTCCTGAAAGAGATAGTTAAGTGAAATTTTGCGGCCGCCAAACCAGAAGAACTGGACCAATGGGGAGCCAGCAGAAGGCATTCACTCAGACAATGCTGCTTTCATGTCAGCGGCCCAATGGGCAGTCACGCCATCCTTTAATTGCCGGCAAAACGCCTGCCAGTGCTCG
>TCONS_00017673
cCAGGTCCAGTTTGACCGTTATTTGGCCTCTCCTGATACACTTGTGATGCCGCAGCTCAACTTCCTGCTCAGCGCTGCTATCAAagaacAGATCTTCAGGCAGTCCACAGAGCTGGTGTGCGGTGCGTATGCAGAGGTGTACAAAGCTGTCACCAACCCTACAAACACCTATAAAGACGCAGAGTCAGTCCTGCACAGATCCCCACAGCAGGTACAAGCCCTGCTGTCCTGAAGCCAGAACGCACACTAACAAGTGAGGTGATGTCCAACACACTCAATGTTCTGGGTCTGACAGTGGATTCAGGACAGCAGGTCATGTTGGAGTGCTCTCAACTGGTGAAGGGGTGTTTTTTATGTATCGTTCTTACAGTTTAATGTCGATTATGTGAAACAAAGACGGTCTGCGTACAGAAATAAGTCTGGATTTCTCTGTggacagcatttttatttttcctccCCACATGGATGGAGATCCCCACTAGCAGGCCCGGGGGAAGCAAACTGCAGACtatatcattcacacacacacacacatattcacatgcactcaaatATACATACAGTCATTAGATTACGTACGCTGGGGCTTTTTCTTTCACAGCCACAGAGGCCTTGAATGAGTCAGGGTCAGTCTGTGATctggaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

symbol description
cog6 Predicted to be involved in intra-Golgi vesicle-mediated transport. Predicted to act upstream of or within protein transport. Predicted to be located in Golgi membrane. Predicted to be part of Golgi transport complex. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIl. Orthologous to human COG6 (component of oligomeric golgi complex 6).

GO:

id name namespace
GO:0006891 intra-Golgi vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0017119 Golgi transport complex cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040426-909 Predicted to be involved in intra-Golgi vesicle-mediated transport. Predicted to act upstream of or within protein transport. Predicted to be located in Golgi membrane. Predicted to be part of Golgi transport complex. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIl. Orthologous to human COG6 (component of oligomeric golgi complex 6).

Ensembl:

ensembl_id ENSDARG00000103149

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017672 False 3885 mRNA 0.49 19 3454529 3534705
TCONS_00017673 True 716 mRNA 0.48 2 3455839 3466015

Neighbor

gene id symbol gene type direction distance location
XLOC_008954 slc25a15a coding downstream 172309 3255054 ~ 3282220 (-)
XLOC_008953 stoml3a coding downstream 201802 3246323 ~ 3252727 (-)
XLOC_008952 NA coding downstream 292070 3160438 ~ 3162459 (-)
XLOC_008951 NA coding downstream 338267 3115337 ~ 3116262 (-)
XLOC_008950 slitrk5a coding downstream 358379 3089212 ~ 3096150 (-)
XLOC_008956 lpar6a coding upstream 121507 3656212 ~ 3736773 (-)
XLOC_008957 NA coding upstream 219861 3754566 ~ 3760957 (-)
XLOC_008958 mindy4b coding upstream 391390 3926095 ~ 3940671 (-)
XLOC_008959 clrn1 coding upstream 412991 3947696 ~ 3956906 (-)
XLOC_008960 gpr171 coding upstream 423171 3957876 ~ 3963649 (-)
XLOC_008946 CABZ01086029.1 non-coding downstream 523508 2918257 ~ 2931021 (-)
XLOC_008942 NA non-coding downstream 638387 2813516 ~ 2816142 (-)
XLOC_008940 CABZ01086049.1 non-coding downstream 718031 2736383 ~ 2736498 (-)
XLOC_008970 NA non-coding upstream 628873 4163578 ~ 4174873 (-)
XLOC_008973 CU467614.1 non-coding upstream 830453 4365158 ~ 4365272 (-)
XLOC_008997 FO704791.1 non-coding upstream 1848357 5383062 ~ 5383180 (-)
XLOC_009008 NA non-coding upstream 2363705 5898410 ~ 5901982 (-)

Expression


Co-expression Network