RNA id: TCONS_00017673


Basic Information

Item Value
RNA id TCONS_00017673
length 716
RNA type mRNA
GC content 0.48
exon number 2
gene id XLOC_008955
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 3454529 ~ 3534705 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cCAGGTCCAGTTTGACCGTTATTTGGCCTCTCCTGATACACTTGTGATGCCGCAGCTCAACTTCCTGCTCAGCGCTGCTATCAAagaacAGATCTTCAGGCAGTCCACAGAGCTGGTGTGCGGTGCGTATGCAGAGGTGTACAAAGCTGTCACCAACCCTACAAACACCTATAAAGACGCAGAGTCAGTCCTGCACAGATCCCCACAGCAGGTACAAGCCCTGCTGTCCTGAAGCCAGAACGCACACTAACAAGTGAGGTGATGTCCAACACACTCAATGTTCTGGGTCTGACAGTGGATTCAGGACAGCAGGTCATGTTGGAGTGCTCTCAACTGGTGAAGGGGTGTTTTTTATGTATCGTTCTTACAGTTTAATGTCGATTATGTGAAACAAAGACGGTCTGCGTACAGAAATAAGTCTGGATTTCTCTGTggacagcatttttatttttcctccCCACATGGATGGAGATCCCCACTAGCAGGCCCGGGGGAAGCAAACTGCAGACtatatcattcacacacacacacacatattcacatgcactcaaatATACATACAGTCATTAGATTACGTACGCTGGGGCTTTTTCTTTCACAGCCACAGAGGCCTTGAATGAGTCAGGGTCAGTCTGTGATctggaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO:

id name namespace
GO:0006891 intra-Golgi vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0017119 Golgi transport complex cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040426-909 Predicted to be involved in intra-Golgi vesicle-mediated transport. Predicted to act upstream of or within protein transport. Predicted to be located in Golgi membrane. Predicted to be part of Golgi transport complex. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIl. Orthologous to human COG6 (component of oligomeric golgi complex 6).

Ensembl:

ensembl_id ENSDART00000169559

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019116 lncRNA downstream 293380 3160438 ~ 3162459 (-) True XLOC_008952
TCONS_00019115 lncRNA downstream 339577 3115337 ~ 3116262 (-) True XLOC_008951
TCONS_00017662 lncRNA downstream 524818 2918257 ~ 2931021 (-) True XLOC_008946
TCONS_00019114 lncRNA downstream 639697 2813516 ~ 2816142 (-) True XLOC_008942
TCONS_00019113 lncRNA downstream 829911 2618279 ~ 2625928 (-) False XLOC_008933
TCONS_00019117 lncRNA upstream 288551 3754566 ~ 3760957 (-) True XLOC_008957
TCONS_00019118 lncRNA upstream 697563 4163578 ~ 4174873 (-) True XLOC_008970
TCONS_00017697 lncRNA upstream 956466 4422481 ~ 4436431 (-) False XLOC_008974
TCONS_00017701 lncRNA upstream 963003 4429018 ~ 4445598 (-) False XLOC_008974
TCONS_00017703 lncRNA upstream 979045 4445060 ~ 4485867 (-) True XLOC_008974
TCONS_00017670 mRNA downstream 173619 3255054 ~ 3282220 (-) False XLOC_008954
TCONS_00017671 mRNA downstream 178204 3255564 ~ 3277635 (-) True XLOC_008954
TCONS_00017669 mRNA downstream 203112 3246323 ~ 3252727 (-) True XLOC_008953
TCONS_00017668 mRNA downstream 359689 3089212 ~ 3096150 (-) True XLOC_008950
TCONS_00017667 mRNA downstream 361323 3089212 ~ 3094516 (-) False XLOC_008950
TCONS_00017674 mRNA upstream 190197 3656212 ~ 3736773 (-) False XLOC_008956
TCONS_00017675 mRNA upstream 269053 3735068 ~ 3736149 (-) True XLOC_008956
TCONS_00017676 mRNA upstream 460080 3926095 ~ 3940671 (-) True XLOC_008958
TCONS_00017677 mRNA upstream 481681 3947696 ~ 3956906 (-) True XLOC_008959
TCONS_00017678 mRNA upstream 491861 3957876 ~ 3963649 (-) False XLOC_008960
TCONS_00017655 other downstream 719341 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017647 other downstream 830176 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017639 other downstream 1189756 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017627 other downstream 1617956 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017597 other downstream 2133933 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017689 other upstream 638393 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017694 other upstream 899143 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017700 other upstream 960479 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017702 other upstream 969450 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017735 other upstream 1917047 5383062 ~ 5383180 (-) True XLOC_008997

Expression Profile

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