RNA id: TCONS_00017674


Basic Information

Item Value
RNA id TCONS_00017674
length 1928
RNA type mRNA
GC content 0.47
exon number 3
gene id XLOC_008956
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 3656212 ~ 3736773 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAAGAGTCCTCCACAGCCACAGCTGCCTCGGTCTCCCGCCTCTTCAATGCGCACAGCAATGAATGCCCCTGGGGCGACTGCTGACGGAGACACCGAGACAGAGCCGCGAGGAAGGGGGTGGGCCAGGAAACAGACCCTCGGCTGAAGCCAGGactcactcatttactcacactgAGTCTACACACAGGTGCCCCAATCTGTGGGAACAAAGAGAGCGGATACTATCTGGGAATGCTTCAAGTGCGACTTCTGCGGAGAGGATTGTAACTGCCACCCCATAGCGTGCCTTTGTCTGTTGTTAAGATGTACAATACAAGTCTTGAGATGGAAATGCTCAATGTGAGCAACGTCACTCACTGCCCGAAGAATGACAACTTTAAATATCCCCTCTACAGCATGGTGTTTAGCATCGTCTTCATGGTAGGACTGATCACGAATGTTGCCGCCATGTACATCTTCATGTGTTCGTTAAAACTGCGGAATGAAACCACTACGTATATGATGAACCTAGTAGTGTCGGACTTGTTATTCGTGCTCACTCTACCCTTGAGGGTTTTTTACTTCGTCCAGCAGAACTGGCCGTTCGGCAGTCTCCTCTGCAAGCTTTCCGTTTCGCTCTTCTACACCAACATGTACGGGAGCATCCTATTCCTGACCTGCATAAGCGTGGACCGCTTTCTGGCCATCGTTTACCCCTTCCGATCTAGAGGACTCCGAACCAAACGCAATGCCAAAATTGTGTGCGCTGCAGTTTGGGTTCTCGTTCTTTCAGGAAGCCTTCCTACGGGATTCATGCTCAACAGTACTAATAAGCTGGAGAACAACAGCATCTCCTGCTTCGAGAACTTCTCCTCGAAGGAATGGAAGAGCCATCTTTCAAAAGTGGTGATTTTTATAGAGACGGTGGGGTTTCTGATCCCACTGATGCTCAATGTGGTTTGCTCTGCGATGGTGCTTCAGACTTTAAGGAGACCAAACACTGTGAGTCGAGGAGGGAAGCTCAACAAGAAGAAGATCTTGAGGATGATCATCGTCCACCTCTTCATCTTCTGCTTCTGCTTCATCCCGTACAACGTCAACCTTGTCTTCTACTCCCTCGTGCGAACAAACACCTTGAAAGGATGCGCGGCGGAGTCGGTAGTCCGGACCATCTATCCCATCGCTCTGTGCATCGCCGTGTCCAACTGCTGCTTCGATCCCATCGTCTACTATTTCACCTCGGAGACTATACAGAACTCCATTAAGAGGAAGACCCAGACCGGCCATTCCATAGATGTTAAATTTTCCGAGGCCTTGCAGTCGGAGACGTCGTCCACCCTACAGTTCAGCCTGAGGTCCATCAAGAACAAGATGTTTCACAATGAGTCCCACGTATGAGGGATTACCAGTGGATTTAAGGACACATAAAGCACTCTTTAGCATGTGGATATATATCGGGTTTGTTTAATATCTCTGAGGGCGATAAGTAAACGGTGGGCTCTTATAGGGATTTACCTCCCTGTAAAAGTCATCCTTCAGTCCAGAACCCTGGGACACACCTGTTCCCCTTGGAAATATGTCCAAACATTTGAAAAGCGCAGTAAGGATAATGCAAATATAGATCAGCTGGAAGTCTCTAACTGTTTGTGAATGTACTCACATTTCCAGAATTTGGTAAGTTAATGTggaaacctgagcaccaagaggaaaccaacgccaacatggggagaacatgcaaactccacacagaaacgccaactgacccagtcggggctcgaaccagtgatctttttgctgtgaggcgattgtgctacacacTATGCCACACTCACATAATAACATCTCtagaattttaaaaatgatatacTTTCACAAAAAAGTCTGCAGAAAAAGAACACTGAGACAGAACTATGACAAATTATTTCATTCAAAGTTAAAAAGACAAAAG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0035025 positive regulation of Rho protein signal transduction biological_process
GO:0051482 positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G protein-coupled signaling pathway biological_process
GO:0001525 angiogenesis biological_process
GO:0007165 signal transduction biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0070915 lysophosphatidic acid receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061013-343 Enables lysophosphatidic acid receptor activity. Involved in adenylate cyclase-modulating G protein-coupled receptor signaling pathway. Acts upstream of or within angiogenesis. Is integral component of plasma membrane. Human ortholog(s) of this gene implicated in hypotrichosis. Orthologous to human LPAR6 (lysophosphatidic acid receptor 6).

Ensembl:

ensembl_id ENSDART00000090624

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019116 lncRNA downstream 493753 3160438 ~ 3162459 (-) True XLOC_008952
TCONS_00019115 lncRNA downstream 539950 3115337 ~ 3116262 (-) True XLOC_008951
TCONS_00017662 lncRNA downstream 725191 2918257 ~ 2931021 (-) True XLOC_008946
TCONS_00019114 lncRNA downstream 840070 2813516 ~ 2816142 (-) True XLOC_008942
TCONS_00019113 lncRNA downstream 1030284 2618279 ~ 2625928 (-) False XLOC_008933
TCONS_00019117 lncRNA upstream 17793 3754566 ~ 3760957 (-) True XLOC_008957
TCONS_00019118 lncRNA upstream 426805 4163578 ~ 4174873 (-) True XLOC_008970
TCONS_00017697 lncRNA upstream 685708 4422481 ~ 4436431 (-) False XLOC_008974
TCONS_00017701 lncRNA upstream 692245 4429018 ~ 4445598 (-) False XLOC_008974
TCONS_00017703 lncRNA upstream 708287 4445060 ~ 4485867 (-) True XLOC_008974
TCONS_00017672 mRNA downstream 121507 3454529 ~ 3534705 (-) False XLOC_008955
TCONS_00017673 mRNA downstream 190197 3455839 ~ 3466015 (-) True XLOC_008955
TCONS_00017670 mRNA downstream 373992 3255054 ~ 3282220 (-) False XLOC_008954
TCONS_00017671 mRNA downstream 378577 3255564 ~ 3277635 (-) True XLOC_008954
TCONS_00017669 mRNA downstream 403485 3246323 ~ 3252727 (-) True XLOC_008953
TCONS_00017676 mRNA upstream 189322 3926095 ~ 3940671 (-) True XLOC_008958
TCONS_00017677 mRNA upstream 210923 3947696 ~ 3956906 (-) True XLOC_008959
TCONS_00017678 mRNA upstream 221103 3957876 ~ 3963649 (-) False XLOC_008960
TCONS_00017679 mRNA upstream 224636 3961409 ~ 3963649 (-) True XLOC_008960
TCONS_00017680 mRNA upstream 234024 3970797 ~ 3976035 (-) True XLOC_008961
TCONS_00017655 other downstream 919714 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017647 other downstream 1030549 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017639 other downstream 1390129 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017627 other downstream 1818329 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017597 other downstream 2334306 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017689 other upstream 367635 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017694 other upstream 628385 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017700 other upstream 689721 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017702 other upstream 698692 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017735 other upstream 1646289 5383062 ~ 5383180 (-) True XLOC_008997

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000092_00847979_00851661.mRNA True 2116 mRNA 0.41 3 CI01000092 847298 ~ 851661 (-)