XLOC_000933 (CZQB01066256.1)


Basic Information

Item Value
gene id XLOC_000933
gene name CZQB01066256.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 1350111 ~ 1352997 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001488
TTTGCTTCTCTACGCCAGCGCTTTTATCAGCGTCATCACGCAACGAGCTGACGCAGATCCTCTCCGCGCGAAATTTTGAGAGTTCCGTTGAGAACAAAACAAGAGCGCGAAGCAGCAGCTGCAGCAGCACCGCGCGCCGGTTCCGCTTCACAGCCGTAAAACTACCAACTGCATCACGATGGCGGAGCTCGGCTGCTACTCTCCCAGCTTCAAGAAACCGTCCGAGGTGCTGCGCATGCGGAGGCAGCGGGCGCGGAGTGAAGGACCAGGCGGGAAAGTGTCGAGTCCAGCGCTATCCGGGCTCCGGCCGTTTTCCCCGGGGCCGCTGCTCACCGCTCCGGGACGCGGTAACGGCGGAGTCAAGCGGAGAAACCCGTTCGCTAGCATCGAGAACACCTACAGCAGCCCGAAGAAGAGGGCTTTAATACAGGAGGATGGTAGAAAGAGCTCAGCCGCGGGTCCAGACGAGAAACTCCGAGAAGAACCGAAAACCGGAGCTTTACTGCGGGAGGAGCTGCTGCACACTGACCGACTCAAACAACAGCACACACAGGCAGCGGTGTCTCTCTCTGAAGCTGACGGTGTGTTTGAGGATGATCTGTTTGATCCGCAGAGCTCCGCTGCGGTGCTGAAGGTGAGTGGACGATGCTCGTATGTGGATTTATTTGTGGGATTGACAGGCTTCCTGTGGGTTGTGGAATATCTGAAATATCTATCAATATTTCAGGGAAAATCAgggaattgtatttaatttttgtcCGAGTCATGGAATATGAAGGATTATTGCATGTCATTATAaatttggtattttttttatttattatatgtattttgttttgctgtagcGTGTTTTCATCATGCTGTTTCGTGTGTGTTTGCATATGGTTATGGTTATCGATACAGTGAATGTTCAAATAGTCCAGTGATTACCGAAGTGGGGGTTGGGGACATTTATGAAGTCATTGATGCAGATGGCTTGTGGAGAGGCAGAAGAGTGGGAGGTTGGGAACTCTTGAATTATGCTGTGCTGaccagtgtgtgtgcgcgtgtttgggTTTGCAGAGTCCAGAGGCACTCCGTGACTCTTCTCCGTCTGAGGTGTGTGTGGAGTATCCGGCTGACTGGTCTCTGAAAACGCGTCTGCTGTTCACGTCTCCTCAGTCGTTCTCCTGGGCTGAGCATCTGAAGGCGCAGGAGGAGGCGCAGGGCTTGAGTTCTCACTGCAGAGCCCAGTTCAGCAACATTCCTGCTCACATACcggtatatatatacacacacacacacacacacacacacaaaatatatacacacacacacacaatatatatatatatatacacacacacacacacacacacaaaata
>TCONS_00001487
TTTGCTTCTCTACGCCAGCGCTTTTATCAGCGTCATCACGCAACGAGCTGACGCAGATCCTCTCCGCGCGAAATTTTGAGAGTTCCGTTGAGAACAAAACAAGAGCGCGAAGCAGCAGCTGCAGCAGCACCGCGCGCCGGTTCCGCTTCACAGCCGTAAAACTACCAACTGCATCACGATGGCGGAGCTCGGCTGCTACTCTCCCAGCTTCAAGAAACCGTCCGAGGTGCTGCGCATGCGGAGGCAGCGGGCGCGGAGTGAAGGACCAGGCGGGAAAGTGTCGAGTCCAGCGCTATCCGGGCTCCGGCCGTTTTCCCCGGGGCCGCTGCTCACCGCTCCGGGACGCGGTAACGGCGGAGTCAAGCGGAGAAACCCGTTCGCTAGCATCGAGAACACCTACAGCAGCCCGAAGAAGAGGGCTTTAATACAGGAGGATGGTAGAAAGAGCTCAGCCGCGGGTCCAGACGAGAAACTCCGAGAAGAACCGAAAACCGGAGCTTTACTGCGGGAGGAGCTGCTGCACACTGACCGACTCAAACAACAGCACACACAGGCAGCGGTGTCTCTCTCTGAAGCTGACGGTGTGTTTGAGGATGATCTGTTTGATCCGCAGAGCTCCGCTGCGGTGCTGAAGAGTCCAGAGGCACTCCGTGACTCTTCTCCGTCTGAGGTGTGTGTGGAGTATCCGGCTGACTGGTCTCTGAAAACGCGTCTGCTGTTCACGTCTCCTCAGTCGTTCTCCTGGGCTGAGCATCTGAAGGCGCAGGAGGAGGCGCAGGGCTTGAGTTCTCACTGCAGAGCCCAGTTCAGCAACATTCCTGCTCACATACcggtatatatatacacacacacacacacacacacacacaaaatatatacacacacacacacaatatatatatatatatacacacacacacacacacacacaaaata

Function

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0061028 establishment of endothelial barrier biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0000793 condensed chromosome cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0045277 respiratory chain complex IV cellular_component
GO:0097525 spliceosomal snRNP complex cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117321

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001488 False 1364 lncRNA 0.51 2 1350111 1352997
TCONS_00001487 True 936 lncRNA 0.56 3 1350111 1352997

Neighbor

gene id symbol gene type direction distance location
XLOC_000932 NA coding downstream 34358 1291175 ~ 1315753 (-)
XLOC_000931 NA coding downstream 96917 1143962 ~ 1253194 (-)
XLOC_000930 CU611053.1 coding downstream 299054 1050941 ~ 1051057 (-)
XLOC_000929 NA coding downstream 335245 1005937 ~ 1014866 (-)
XLOC_000928 gart coding downstream 350555 960209 ~ 999556 (-)
XLOC_000934 runx1 coding upstream 9935 1362932 ~ 1402303 (-)
XLOC_000935 NA coding upstream 138944 1491941 ~ 1499393 (-)
XLOC_000936 NA coding upstream 202299 1555296 ~ 1583206 (-)
XLOC_000937 clic6 coding upstream 265997 1618994 ~ 1631399 (-)
XLOC_000938 NA coding upstream 378520 1731517 ~ 1736564 (-)
XLOC_000927 NA non-coding downstream 570497 778575 ~ 779614 (-)
XLOC_000940 NA non-coding upstream 647669 2000666 ~ 2005535 (-)
XLOC_000944 NA non-coding upstream 740999 2093996 ~ 2101261 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000299_04892566_04900169 NA coding CI01000299 null 4890391 ~ 4900536 (+)