Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_043254522.1 |
| length | 752 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 4 |
| gene id | LOC122356070 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_056711.1 |
| NCBI id | CM032080.1 |
| chromosome length | 25085836 |
| location | 3051982 ~ 3278260 (+) |
| genome version | ASM1883169v1_2021_tiger_barb_Genome |
| species | tiger barb (Puntius tetrazona) |
| id | name | namespace |
|---|---|---|
| GO:0009116 | nucleoside metabolic process | biological_process |
| GO:0009117 | nucleotide metabolic process | biological_process |
| GO:0009159 | deoxyribonucleoside monophosphate catabolic process | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0050144 | nucleoside deoxyribosyltransferase activity | molecular_function |
| GO:0070694 | deoxyribonucleoside 5'-monophosphate N-glycosidase activity | molecular_function |
| id | description |
|---|---|
| K22928 | DNPH1; 2'-deoxynucleoside 5'-phosphate N-hydrolase |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_006252271.1 | lncRNA | upstream | 32615 | 3020068 ~ 3020891 (+) | True | LOC122356074 |
| TU133791 | lncRNA | upstream | 36286 | 3016794 ~ 3017220 (+) | True | G90339 |
| TU133785 | lncRNA | upstream | 42865 | 2982743 ~ 3010641 (+) | False | LOC122356072 |
| TU133713 | lncRNA | upstream | 99253 | 2857325 ~ 2954253 (+) | False | G90319 |
| XR_006252297.1 | lncRNA | upstream | 171820 | 2865807 ~ 2881686 (+) | True | LOC122356240 |
| TU133743 | lncRNA | downstream | 144549 | 3199847 ~ 3201487 (+) | True | G90326 |
| XR_006252296.1 | lncRNA | downstream | 190965 | 3246263 ~ 3247132 (+) | True | LOC122356226 |
| TU133829 | lncRNA | downstream | 260365 | 3315663 ~ 3315908 (+) | True | G90365 |
| TU133839 | lncRNA | downstream | 346666 | 3401964 ~ 3403754 (+) | True | G90373 |
| TU133844 | lncRNA | downstream | 394875 | 3450173 ~ 3450485 (+) | True | G90378 |
| XM_043254519.1 | mRNA | upstream | 2839 | 3022616 ~ 3050667 (+) | True | LOC122356067 |
| XM_043254525.1 | mRNA | upstream | 58718 | 2982703 ~ 2994788 (+) | True | LOC122356072 |
| XM_043254845.1 | mRNA | upstream | 74257 | 2971146 ~ 2979249 (+) | True | LOC122356304 |
| XM_043255830.1 | mRNA | upstream | 82359 | 2957658 ~ 2971147 (+) | True | LOC122356776 |
| XM_043256388.1 | mRNA | upstream | 101744 | 2916892 ~ 2951762 (+) | True | LOC122357122 |
| XM_043255841.1 | mRNA | downstream | 152113 | 3207411 ~ 3209753 (+) | True | LOC122356782 |
| XM_043255842.1 | mRNA | downstream | 154494 | 3209792 ~ 3227749 (+) | True | LOC122356783 |
| XM_043255847.1 | mRNA | downstream | 173815 | 3229113 ~ 3231423 (+) | True | LOC122356787 |
| XM_043255849.1 | mRNA | downstream | 179745 | 3235043 ~ 3246109 (+) | True | znf318 |
| XM_043255234.1 | mRNA | downstream | 265131 | 3320429 ~ 3398358 (+) | False | tjap1 |
| TU133786 | other | upstream | 68897 | 2982559 ~ 2984609 (+) | False | LOC122356072 |
| TU133784 | other | upstream | 68897 | 2982743 ~ 2984609 (+) | False | LOC122356072 |
| TU133574 | other | upstream | 583125 | 2469945 ~ 2470381 (+) | True | G90230 |
| TU133396 | other | upstream | 872767 | 2176153 ~ 2180739 (+) | False | cutc |
| XR_006252324.1 | other | upstream | 887478 | 2153422 ~ 2166028 (+) | True | tp53bp2a |
| TU133814 | other | downstream | 119437 | 3174735 ~ 3285406 (+) | True | G90350 |
| TU133813 | other | downstream | 124129 | 3179427 ~ 3179933 (+) | True | G90349 |
| TU133737 | other | downstream | 132528 | 3187826 ~ 3189681 (+) | False | G90324 |
| TU133738 | other | downstream | 132528 | 3187826 ~ 3189681 (+) | False | G90324 |
| TU133730 | other | downstream | 135028 | 3190326 ~ 3192113 (+) | True | G90324 |
