RNA id: TU139406


Basic Information

Item Value
RNA id TU139406
length 7649
RNA type TUCP
GC content 0.43
exon number 2
gene id G94216
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 15877527 ~ 15885222 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCCTCCCGTTCATTAAAGGCCGCCCTTCTATCGACCACAGCTGTCGCCCACAGGATGTTCTCGTCCATtgtgacaaaataaaatgaaatcaagaaGTTAATTCAGAGTATTTGCAAGTCGCAAACTTTCAGGAATAAAAGCAGACCTGCCAGACTGAGATCTGCACCGGTCTTATAGCTCTCAGCAGGAATGTAAAGCCATGTCAGGCCCTGTGTGACAGCTGTGGACAGGAGCTggatcacacacaaacacgcgaTCATGAGCTCACCGTTCAAGCCGGTGCCGTCCACCTCGACAGGCCTGCCCTCTAATGCACTGGGAGTCCATTTTTACACCAACCACGGCACAATAAACACCCCATTTTGGAGATTATGTTATACCTCATAAATGCCTTCTAGCTTGAAAGAACGCATGTTAACACACAATATACAATCACTCAATGGCAAACATCCTGTTGTATGTGGGCAAGAATGCactcaaacatGAATTTTCGATTCAAAATAATGTGAAGACTGAGAATGAAGAATCAAACAAATCTGTCTTTGccttgcttttatttctttgcaaagaaacaaaagaatgatctggtttacacacagtggaGTCTGTGCAAAGAGATAACCGTGTGCTCACAGGCTAGAGGTTTTATAGGctaaagtatacattccaaggttgctcaaattcatctcgaaccaattgaaatagttcAAAACCACACCACCCATCTCGTGTTTACTGTGTCTGGTTGTTCTCAGTTTTCTTCCCGTCTTCAACACAGATAAGGTGTTCTACACCCAGATGAGGTGGTTTAACCGCTGTTACTCATACATTATTTTCCCACACCTCTAGCATCCCAGTTCTCTGTTTGCACATTCGTGTTCATGGTCAGTACAATGGtgttacgaatatatatgtTGCTTAATCTATCTTTCAGTGAAGTTAGTTTTatcaattaaacattaaatgtaatcaattaaaataatttccattacactcctcccttttgatcattcttgaTCACTTATCAAAATCCTTCTGCCGGTTTGGGTAGAGCGTCCTTGACCTgttgagagatctgagagagaaccgaagacagatttttacaatagttcagcatgtcatcttcacacagagcagTAGAGGGCAATGGTCGAGGTTCCGGTCCCACTCCAAGCGATGGAGGCCTgccaaacaagatttcaaatggGCCAGAAGCCGGATGATAGGAGGTATGTTTAAGTATGTCGATTCCCAAAAACTTCCCGAGCAAAAGGTGTGCCATTATCACTGCTAATCTTTTTTGGTATTCCCCACCTTGGGACAGTTTCAGATACTAATGCCTTTGCAACAGCCCCAGCGTTCTGTTTAGATGTGGGGAAGACTTCCAACCACTTTGAGAACATATCAACCAAAACAAGGCAGAATTTCTTGCCTTTGCACggtgtcagttcaatgaaaTCGAACATTATATGATCAAAAGGTTGACTTGGTGGTGGATGTGCTGCCAAAGGGACCTGTTGTCCTCTTCCTACATTGTTTGTGGCACAAATCATACATGATTGACAGTATTTTTCTGCAAAGGAAGTAAATCCTTTTGTGAAccaatattgattgatcatATCAAACATTCCCTTTTTGCTTATGTGATCTAAACTGTGTACTAATTTGGCATAGtgtgggaaaaagtgttttggcaaacaagACTTGTCTTCGGTACTCAGCCAGATGTCGTCTTTCAGTTTGCACTCGGCCTTCACCCATTGTTTTTTCTCCTCTGATGTCGCGAAAACCTGCATAGCTGTAAGAGAACCAGAAGGGAATGTTAGTTCATTATggttaacagttacacatgttAGAGAAGGTTCTGTTCCCTTTGTTGCGTTCTTCGCAGCGATATCAGCGCGTTTATTTCCCAATGATACAAAATCGTTAAATTTGGAATGCGTGATGCACTTGCAAATAGCAAAGACCTTGGAAGCAAAATCGCTTCTAGCAAGGCTGCAATTTTGTCATGATTTTGGATAGGTTTACCATCGGATTTTACATCGCCATAGAGCTGAAAAGTCATGACATGTTGAAAAGGCATAACGAGAGTCTGTGTAGATGGTGACTGTTTTTCCTTCGGCGATTTTACAGGCCTCTGTTAATGCTACTAATTCGGCCGCTTGTGCAGAGCAATGCGCGGGGAGCGCTCCActtgctaatgtttcatgtgcGGTGGTTACTGCGTAGCCTACTCTGTTTTTACCAGTTTCTGGGTCTCGAGACACTGAGCCATCAACAAATAAGACCAGATCTGAATTGTCGAGGggggtttcttttaaatctggtcGTGGTGTGCACACCTGTTCCAATGCAGCGGTACAATTATGTTCCTCGCCATCCTGCTCGGTTGGGAGCAGTGTGGCAGGATTCAACACTGTACACCGTTTGactgtgatgtttggcatttccaatagaatggtattatatctgagccatctggctgttgacaaatgagatgttttctgttctaACAGGATCATAGAGACAGCGTGTGGCACTAGCAGTGTTACATCAGAATACCCCACAATTTCCCTTGAAGCtgaaatagctttttctgctgctgcaacagctctcagacaatttggtagacctgctgccacagggttgagtttacttgaaaaatatgccaCCGGTCTCAGCTTCCCCCGTGatcctgtaacagaacagaagacatgaaaccatttttctcatcgacagtttgcacaaaatttctctcagggtctggaagtcccagacttggggatgtttgtaacaacattttcaacctttcaaacgctttctctgcttcaggagTCCAGGTCAGTCTCTCATGTGGCTGCAACCCTTTTCCATGAGCCAAAGCGCTCAAAGGTGACTCTTTAATGGCAtagttgggaataaatgttCGACAATACGAGcacattcccaaaaatgacagGAGCTGCTTTTTTGTCAGAGGCTTTGGAATTTTTTGAATTGCCTCTATTCTCTTTTGAGTTCAAGATTTTCCCTGCTTGTTGATAATATGACCTAGAAACGTCACCTCTctttttgcaaactgcaactttgacagactgaccttgtggccttcagcagccaaatgtttcaacagcttCACAGTGTCTTGCACACAAGTTTCTTCATCTCTAGCTGACACTAAGAGATCGtcaacatattaaattaaagctgACCCTGGTGTCAATTGTAATGGTTCCAAGCTCCTTTTCAGTGCCTCACCGAACAACACGGGCAAGTTTTTGAATCCTCGGCAGAGTCGAGTAAAAGAGTAAGGTTTGCTgtcaaaattaaaagcaaaccaaaattggCTATCTTTATGAACCGGCACAGAAAAGAAGGCATTGGAAAGATCAACAACCGAAAACCATTCAGCATCACCTGGCATTTGTGATAGGAGTGTGTATGGGTTGGGGACAATAGGGGCTTGTGTTTGAACTGCATCATTTACAGCCTGCAAGTCACAAACCTCCACTCAACTGGCTGGTCTGCGTCTCTTATCTTTTTGACAGGGAAGATAGGTGTACGCACAGGAGAGTTTTCACACTCCACAATCACTCCAGCCTTTTTCAATGCTTCAAAAACTGGTTTAATTCCCTCAATATCCTCCTTTTTTAAAGGATACTGAGGTTTACATGGTCTGTAGtcagattttggaataatttggaTAGGTTCACAATTCTTAATCAATCCCACGTCATGTTTAGAGAAAGCCCAAACAGTCTTTGGAACTTCCTTGAGAGCtggaatgctttccatttcagtttctgtaaggAAGCAGTGACTGGGCAAAGAACTCTCACTCACATGAACTGTGCGTTCAGCTGTTGTAACAGGCTCAGTCAAATACATTCGATATGCAGACAGGGttggattatattcaacatttttctcagcagtCCGCATCCAATTCACATGAAAAATACACGCTTTTACAAAAGGACCAATGTCTTCCCAATGATCATTGTCCCCCTTTGAAAATGACACATGGGGAAGAGAgtccacaacatcaaaaaacttTCAATGCAACAGtagcagcacatttattttctgtccaaattagCCAATTCAAATGTAATGCGTCAATGCATGGAAAccatttttgttcaaacaatTTATCTCTACCCAGAGACACATGTGCTGAGCAATGCAAGTCAGAGAAtggcataaaatcagaattAGGTGAAACTCTGTCCTTAGCAGCATTGACAAGACCTGACAATTGACAATTCATCATCTCGCAATTTCCACTGATAAATGTATAGTGGTGTGTGTTGGattgcagtcagagtttgaatttGGCACTGAACTGCTTTGACACCTTCTGGGCTAGATAACAGAGAAATACCCAGTCTGCACAATAAATCTCTCCCCAGCAGATTTTGAGGACAGTGTTGTGACAGAAGGAAACTGTGTTTGAAGCTTGTGCCATTCTCATCCTCACATCTCAGAGGGACTGTAAAATTCTCTCTAACACTATGGCCAGATGCAGAAGTTGACCATACAAAATTTCCACTTAATTTAGGGACAGAGacaaaatcatttattcttAACACCGAGCTTGTGGTTCCCGAATCGgctaaaaacacctttttaacTCCATTTATCCATAAGCTAACTTGTGGCATTTGTTGATATGCtaaatcattcaaatgagtatatgtgcctaattttctttgtgtaaaagatttctcattttctattttGGCAATGCAATCATGTATGagagcaagcatttcttcattgcaatctgcagcaagcatttcttcattgcaatctgcagcaagcatttcttcattgcagtTAGCGGAGTcaggtgtgggtgtgtgtgtgtcaaacttatCTGTTGTTGTAGTGTGGCCGCCGTAGACTTTGCTCTCGACTCCCCCCTCCTTTTTCGCACTCTGTTGTGCAGCTTTCTGTTGTCAATCTGCTTTCGGTTTAGACTTTGCCGCGCCAGCCGCCATGCGTTTGTTCAAAAGTGGGCACTCGTTTTTCCAATGCCCGGGctcaatgcaataaaaacaaacatccggatcaacttgagacagtctttgtcctcttcctctcccccgCCCTCGACCTCGGTAGTTCGCTCCTCTCCCCTGCTCAACCCTGTACATTGTCAGGCTTGTCAGCTGAAGCTCCCTCTCGCCTTTTCTTCCGGCTTTCTCCTCCAACACTCTTTCAGCATGTAACGCATATTTTCTGATCCTTTCCAGTCTCTCGTCTTCCCAACCGATGCAGGTTTGTTTGACGATAGTCGTTATTTCAGGTCTCAGTCCACTCATAAGGCTGCTACGCAAATGAGACTCCCACATCTGTGGAACTTTCCCTCTGTCATTCGGTTCTGACATTCCACTGTAGGTGTTGAAAGTTTCATACAGTCGCACATAATAGTCGTCGACTGACTCGTCTTTCCTTTGCGTGCAGTAGTTGATCTTAGCCGTGTTGACTTTGACTGCAAAGTGGGTCTTGAACTGTTCGCCCAAAGCTGTCACTGTTGTCCTGTATGTCGTATTATCAGCGTGTTCCCACTCTGCTTGGACTCTCCGTATGTCCGTCTTGGGGAAGTATGGTCGGATCTTGTGCCAATCCATCAGCCCCATTTTGAGTATCAGCAGACGCTTGAGTTTGGGCATCGTGGGGCTGAATTCTTGACAAAACATTTCCAGTTCCGCTGCAAACTTCTCTCCCGAATCTCTGGGATTAGGCATATTTGACATAACCTGTCTCAAGTCTTTCTCACTCTATGGTTGAAAAACCATCGTGGTTCCTTGTGGATCAGCCACTTGAATCATGGGGAAAGAGTTGtcctcatccacacagtccgACTCCAGTGTCAGTCTTTCAAGCGACCCGGACCTGGTTCTGGCGCAGGTCATGGAGTATCTCACTTTTCGAACTCCGTCGCTCGATGTGGAAGGCTGGGATGGTGCAGGTGCTGCTGGAGCGGTAGAAGAGGCGGGCAGCAGTCCCTCTCTCTGCAAGCCGTCGATCTGGGCAGGTTTCTTACTGGGCGGTGGGAGTACAGGTGCCATCTCAGAAGCGCTGTAAGACGGAGGTTGTGGTAGTGGCGGAATTGCTGATACCGGTGGTGGCGCAAGTGGCTGGGGCATTTGTTGGTATGGGTGAGGCCAGGAGTCAAGATCAAAGTCCACTTTGGCGCATTGTAGTTCTAGAGAGAGgtagagagaagaagaagaattctGAGCAGTATACTCTGTTCTTTtaacttcatttgtttttgaatttacatttttataaggCATTTCTTTCAGGGCTTGCCGTTTCTCTCGTCGTTCTGCCTCTTCTAGCCAATAATTCAGATattgtctgtgtttctgaaacatatctttttgtttatttttcaactttttcttaTCCCTAAGTTTACTTTCACGCTTTTCCAAACTTTCCTTCACCCTGTTTAGAGTCGTCACACTAAACGTGCCCCTTTTTGGAAAATCATGATCTTTGACCCAAATCGGTACCACCTCCATAATTCTCTGTCCATATTTCTTACTCATATCAAAGTAAATTGGGCTGTTCAAATCATCTAGATCGATTTCAGGTTTGACATTTCTAGACCCCATACTTGCAATCCAAGACATTACCTGGAACGCGTCCGCTTTCCCTTCACACTCAGTCGTCACTGCCGTGTGGCTCTGCACTTACTCGCACAGAGTCTTTTTTTCACCTTTCTGTCCTGCTTACTCGCAGACAATGCCCTTTTCACTAACCCGTGAAATCAAATAGGGTGGCTCGGCCATGCGTTCGCGAATCTAGGAATATCAAACCGCTCGTTGTTTTTGTCAgaccaagatgaaagaaaatatataccCTTCTCAGTGTTACCAACCAAAAACCCTTAatttaagacaaagacaaattctGGTCTCAAAATCAGTCTCACCGTTTTCAGCACACGTTTTCTGGTTCTTTTAAGGAATCCTCAGACGTCAGTTCCCTCTTCCCTGAAACCTTTAGGGGTACAGGGCTAAGACCCTTTGTGGGCTTAGGGTGATCAGCCTACCAACGCCTTTCAAGTCCCGGACGATCAGCTGTCGGATCCCTTTCTCGTCGCCAAGTttgtcatggaattttcaattcaaaataatttgaaaactgACAATGAAGAATCAAACAAATCTGTCTTTgcctttcttttatttctttgcaaaaaaacaaaagaatgatctggtttacacacagtggagtctgtgagcaaagagataaccgTGTGCTCACAGGctagaggttttataggcaaaagtatacattccaaggttgctcaaattcatctcgaaccaattgaaatagttcAAAACCACACCACCCATCTCGTGTTTACTGTGTCTGGTTGTTCTCAGTTTTCTTCCTGTCTTCAACACAGATAAGGTGTTCTACACCCAGATGAGGTGGTTTAACCGCTGTTACTCATACATTATTTTCCCACACCTCTAGCATCCCAGTTCTCTGTTTGCACATTCGTGTTCATGGTCAGTACAATGGtgttacgaatatatatgtTGCTTAATCTATCTTTCAGTGAAGTTAGTTTTatcaattaaacattaaatgtaatcaattaaaataatttccatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139382 lncRNA downstream 113782 15763424 ~ 15763745 (-) True G94200
TU139381 lncRNA downstream 114684 15762551 ~ 15762843 (-) True G94199
TU139369 lncRNA downstream 156711 15686413 ~ 15720816 (-) False zgc:123010
TU139297 lncRNA downstream 236894 15640275 ~ 15640633 (-) True G94145
TU139282 lncRNA downstream 271814 15604687 ~ 15605713 (-) True G94132
TU139429 lncRNA upstream 22048 15907270 ~ 15907491 (-) True G94232
TU139455 lncRNA upstream 81792 15967014 ~ 15967343 (-) True G94247
TU139518 lncRNA upstream 444920 16330142 ~ 16332347 (-) True G94298
TU139539 lncRNA upstream 491351 16376573 ~ 16376923 (-) True G94308
TU139696 lncRNA upstream 537444 16422666 ~ 16423793 (-) True G94411
XM_043255688.1 mRNA downstream 690 15872075 ~ 15876837 (-) False st3gal7
XM_043255687.1 mRNA downstream 706 15872075 ~ 15876821 (-) True st3gal7
XM_043255331.1 mRNA downstream 83987 15774777 ~ 15793540 (-) False LOC122356531
XM_043255330.1 mRNA downstream 83989 15778448 ~ 15793538 (-) False LOC122356531
XM_043255328.1 mRNA downstream 83990 15774777 ~ 15793537 (-) False LOC122356531
XM_043254666.1 mRNA upstream 4751 15889973 ~ 15893677 (-) True morn4
XM_043254592.1 mRNA upstream 124465 16009687 ~ 16169204 (-) False pcdh15a
XM_043254587.1 mRNA upstream 124465 16009687 ~ 16169204 (-) False pcdh15a
XM_043254591.1 mRNA upstream 124465 16009687 ~ 16162753 (-) False pcdh15a
XM_043254594.1 mRNA upstream 124465 16009687 ~ 16162753 (-) False pcdh15a
XR_006252348.1 other downstream 83989 15777479 ~ 15793538 (-) False LOC122356531
TU139376 other downstream 122467 15752647 ~ 15755060 (-) True nkx2.3
TU139299 other downstream 235024 15642031 ~ 15642503 (-) True G94147
TU139278 other downstream 293610 15564617 ~ 15583917 (-) True G94128
TU139178 other downstream 624246 15250575 ~ 15253281 (-) False col9a1b
XR_006252284.1 other upstream 126580 16011802 ~ 16162753 (-) False pcdh15a
XR_006252287.1 other upstream 129095 16014317 ~ 16162753 (-) False pcdh15a
XR_006252286.1 other upstream 129095 16014317 ~ 16162753 (-) False pcdh15a
XR_006252285.1 other upstream 129095 16014317 ~ 16162753 (-) False pcdh15a
TU139489 other upstream 404932 16290154 ~ 16292366 (-) False cisd1

Expression Profile