RNA id: XM_043255687.1


Basic Information

Item Value
RNA id XM_043255687.1
length 2189
RNA type mRNA
GC content 0.42
exon number 7
gene id st3gal7
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 15872075 ~ 15876837 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATAAAGAATATAAAGGGACCTTTGAAACATGGCTTTTAGGAATGATATCAAGCATAATCATAAACTGAATTGTGTGGTTGTTTGAACAGTACTAGATAAAGTACTGTGGTATACAAAGAGAAGTCTCTGAGACGGATAAATGATTAACTGTGAGGTGGGATCAGAGTGAGACAAAACACGGCAGTGAATGAAAGGGACAAAAGAGCAGCTCATTTTCAATACAACACAGACATGTTTCTATCTCCACACCTGGGAGTAGACGACAGCATCTGAAATTAGAGGTGTAGTTAAGAATTGGTTTGGACAAAATGGTGACGCTGAAACATTTGAGCGTTAATGATAACGACGAAGACAGCGTTCCTCTGTTACCGGAAGCCAGCAGCTTGGAGAGCGCAACCACCCAACACAGCAGGGCAGAGTCCAGGGAATTCTTCCTTAGCCGGAGGAACAACTTCATTTTAAGCattgctctgttgctgagctgTTACTCGGCCATTCTGGTTCCTGCGTATCTGCCAAGACCAGAGCCCATCTGGACTAATGACAGCTCTGCTGAAACTCTGGCTCTGCTGAATCAGTCAGCGGCTCTGCTGAATCAGTCCTGTCGCAGCGGCTGGAGCGTGGAGAGGGTGAGAGCGTTGTCTATACCTGCTGGGCTGCTGAAGATTCCCGTGTTCCTGGAGAACGGCACAGGAGACTGGGCGCTGCCTCCTCCTCTGGGTCTGCAGGGTAGTGAGGAGATGGTGGCTCAGGCCCTGAAAGCCCTGCCTTATACTGCTGTACCCACTGGCCCAGAGACCTGCAGGAGATGCGTGGTGGTTGGAAGCGGTGGCATTTTACACGGCAAAAATCTTGGTCCTCACATAGACCAGTACAACATCATCATCAGAATGAACAATGCTCCAGTATTTGGATATGAAAAAGACGCTGGATCCAGAACTACCATTCGCCTCATTTATCCAGAAGCGGCTCCTTCTCAGACACAAGAATACGAGAGTACTGAACTGGTGGCTTTGGTGGCATTCAAGAGTTTAGATTTAGCGTGGCTCAAATCTGTGGTAACCAAAGAACCTTTGAGCTGGTGGTCTAAATTGTGGTTCTGGAAGGACGTAATAGACTCGATCCCTCTTCAACCAGAAAATGTTCGCATCCTGAATCCTGAAATCATGTACAGGACGGGGCAGGTGCTGCAGACCTACGCAGAGCAACAGAAAAAGatGGTGCCGACGCTGGGTATGACGGCGGTAGTTCTGGCCCTGCAGGTGTGTGACGAGGTGAGTTTAGCTGGATTTGGATACGACCTGCAGCACCCTGGAGCTCTGCTGCATTATTACGGCTCTCTCCGCATGGATGCCATGAACACACAGGTGGTTCACGACGTCAGCGCCGAGACCATCTTGCTGCGGGAGCTGGTCAAATCTGGAGCGGTGAGAGACCTCACTGGTGCACTGTGATGACTGCGGAAACTATCCATGCTTCCAATAGTTAAGAGAGATGGCAAACAGCAGAAAACTGTCCAGACACCCGGACTTGAGCAGGCCACCTTCAACGTCACAAAACAATAGGGTCAATCTCAACATTGCTATTCATAattttacaatgtttaaaaatgttaatatttaggGAAAATACAACATAAGACAATAcccaataacaaaataatatacaaaggCATTTAAGTGGACTCGACTAAaccaaactaaaactaaactaaaccaaaagCTACTATAGTAGACTTATAATAGACCCAAATACAGCTTTTTAAAGgatgacagaatattttatccaaaaaaattacttatttattttcttgcaaaaaaaaactgattacatagtgtttaaaaacattttttaaagcaaaacattgcgtttaaatacaaacaatactatagcaaaatataaatgacGTATTAATGTTAGTATCAGTTCTGtgaaatatcacaattttaaaacttaaagcagagtgaaaaaaatgcacttacattattaaaacatttttcttgagTTAATCTTTCTGTAATTCATGATTGACAAATTTctgacaaattaaatttaaaaaaagtgctgacATAAAGGAAGGAGAGAAATCGCAATGAAATTTAtatgtttgaataaattattatctCCTTTGAATCAAGTGcatgtaatttatgtatttaacttTGAAATAACCATACTTCAAAACCATA

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0097503 sialylation biological_process
GO:0030173 integral component of Golgi membrane cellular_component
GO:0004308 exo-alpha-sialidase activity molecular_function
GO:0047291 lactosylceramide alpha-2,3-sialyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139382 lncRNA downstream 108330 15763424 ~ 15763745 (-) True G94200
TU139381 lncRNA downstream 109232 15762551 ~ 15762843 (-) True G94199
TU139369 lncRNA downstream 151259 15686413 ~ 15720816 (-) False zgc:123010
TU139297 lncRNA downstream 231442 15640275 ~ 15640633 (-) True G94145
TU139282 lncRNA downstream 266362 15604687 ~ 15605713 (-) True G94132
TU139407 lncRNA upstream 706 15877527 ~ 15885222 (-) False G94216
TU139429 lncRNA upstream 30449 15907270 ~ 15907491 (-) True G94232
TU139455 lncRNA upstream 90193 15967014 ~ 15967343 (-) True G94247
TU139518 lncRNA upstream 453321 16330142 ~ 16332347 (-) True G94298
TU139539 lncRNA upstream 499752 16376573 ~ 16376923 (-) True G94308
XM_043255331.1 mRNA downstream 78535 15774777 ~ 15793540 (-) False LOC122356531
XM_043255330.1 mRNA downstream 78537 15778448 ~ 15793538 (-) False LOC122356531
XM_043255328.1 mRNA downstream 78538 15774777 ~ 15793537 (-) False LOC122356531
XM_043255329.1 mRNA downstream 78538 15774777 ~ 15793537 (-) True LOC122356531
XM_043254609.1 mRNA downstream 116947 15752636 ~ 15755128 (-) False nkx2.3
XM_043254666.1 mRNA upstream 13152 15889973 ~ 15893677 (-) True morn4
XM_043254592.1 mRNA upstream 132866 16009687 ~ 16169204 (-) False pcdh15a
XM_043254587.1 mRNA upstream 132866 16009687 ~ 16169204 (-) False pcdh15a
XM_043254591.1 mRNA upstream 132866 16009687 ~ 16162753 (-) False pcdh15a
XM_043254594.1 mRNA upstream 132866 16009687 ~ 16162753 (-) False pcdh15a
XR_006252348.1 other downstream 78537 15777479 ~ 15793538 (-) False LOC122356531
TU139376 other downstream 117015 15752647 ~ 15755060 (-) True nkx2.3
TU139299 other downstream 229572 15642031 ~ 15642503 (-) True G94147
TU139278 other downstream 288158 15564617 ~ 15583917 (-) True G94128
TU139178 other downstream 618794 15250575 ~ 15253281 (-) False col9a1b
TU139406 other upstream 706 15877527 ~ 15885222 (-) True G94216
XR_006252284.1 other upstream 134981 16011802 ~ 16162753 (-) False pcdh15a
XR_006252287.1 other upstream 137496 16014317 ~ 16162753 (-) False pcdh15a
XR_006252286.1 other upstream 137496 16014317 ~ 16162753 (-) False pcdh15a
XR_006252285.1 other upstream 137496 16014317 ~ 16162753 (-) False pcdh15a

Expression Profile