RNA id: TU140438


Basic Information

Item Value
RNA id TU140438
length 3286
lncRNA type sense_over
GC content 0.42
exon number 3
gene id LOC122357020
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 18957703 ~ 18975524 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATAACTTGCTCTCTCTCTGCGGAACAGACGCCGGAGAGCGAGCCTCGGCGAGGAAGTGCACTTAAGAAAACACCGAGACAAAAGAGACCATTCAAAACAATCCTGTGGACGATTTTCAAACAGGATCTTATGTGACAGCTGCTCCAAAGGAAACGAACGCATCGAGAGATTTAGAGCCATCGATCGCCTGCTATTGGAATTGTACTCAATTATTTTTTACGACGCTTTTTAATCTCTGGATACTTCGAAATTTGccctttgttttgttgtctATCGCTAAGATGCGTTAACGCGTTTTCGCCCAGGCGGATATGTCTGATACGTCCAGAGGTATGGTTTGCCGAACCTAGCCAGCAGCGCGTGCAGATGGCAGCACCTGTCGGAGCCATGGGGCCGGAGATGGCGGTCGCCCGGGAGCTGCGGCGCATCGGAGACGAGTTCAACCGCCTGTACTGTCTGGGGGCCGGTGCAGGCGGGAACAACGCGGCCCAGCTGCGCGCCCCCAACGAACACGCCGTCATCGTGTGGATGAACGACCTTATCGGACGTGTAGTACAGTTTTTCCTGCGAAGGAGATGATCGACACATTGAACGCCCAGCAGACGCGTAGCAGACATGTAGCATCATACATCTGactgtaaatatgtacataataagGGATAACAGCAGCGCTGCTCTTCCGCAAACCTCTCCGGGTTTCGGCGTACAGTTTTGGACCTGTCGGGATGTGTGCAGACCTGGACGGATACATAAATCGGGACCCTCGGCCATCCATAGACTGACTCACAGCAGAGTTTCCTGCGTTCACATGGAAAGCTGAGCCATTAGATGCTGTGTTGACGTGGAGGTTTTTTTAACCCCACGTGGAGTGTGGAAAACGTGCCTTCATTGCCTGTTTGCCCTTGACACGTCTCTCTTTTTGGTCTTTACcctgtctttttctttattgcttttatatttattttcactgtatttaatttgtacattttgtgtaTAATTTGAACGTGGACGTTAGTCGGTCAAGCGGCGATATTAGTGGTTCTGCCTGTCCCTCGCGTGTTCAATGGCTCCAGGTTTGCACTTGCCTTTGGTTTGCGTAGTCTATACAAATCAAATAGAATAGAAGATGACAAACcccaaaacagaaaatgaagtCGGAGTTTTTATACAATTGCAATTGAGGATATGACCGAAGCTCACAATATATAGAAATTTTACctatattatttgcatatatcAAATGCATTCTCACTTTGAAGCCACATAATTAAAGTCCTTTTCACATGACTCCCAATGCATTGAGAAATTTAAAGCACTGAGCTACTGCATTGCAAGCTTTGTTACAAATGGAAGGGACACATGAATATTTTCATTAGGTTATAGTCAGTAGTCTGATAAACTGAAAGGAAGACATTGGCTAGTTACAGTAACTTGACGTTACAGTACGGCTGACACTTTCCATTTTAGTGTGTATTTGgaagaaattacaaaaataaaaatgacttctcAAAAGATCCCATGCTTAGGGTAAATTTCGTGGCAGAAATTTCAATAGGAATCAATAGGAGAGTTTTGCATCAGAGCCAAAAAAACGTTTCTTGCACAGATTTCACTCGTGTTCAAGTTGGTCATGTGGTGATCACCGTTTTGACCGACCgaaagctgcttggtttgaaagcACTCCTGTTTGAGCGGCAGTGACTACTAGACCTTTCTTGGCCTGTAGACTTATAACCGTTGATTTTgcctaaaacataaaatcaattattaacTTGAACCCTCTTTTTAAAGCACGTTATATAGAACTCAAAATGAACCTACATTTGACAAACTGTGTTTCTTACCCAGAAAATAGCTTTTGCCGTTTTGCTATCTTCAAAGCTTTTCCCGCTAAGATCAAAGTGCCTGCTTTATGCTTGTGTTTAAAGATGAGAGTCATGTGTGAAGGTCTTCTGAGCACCTTCAGGTACTCCTAAATCTCACAGTTCGAGCATTGTTTTATGCGTTTGAATTCCTGCCGCTGATTAAATCAAATCTGACAGGCAAAGATAGTAAGTGTAACTAACATAgacatatttgttgttttgacaTCATAAACATTCCACATTTGGTATTTCGGTTTTTGTTAGATTCCTTGTTtggactgtttgtttgttttttagtaagcaaaagtgacatttaattGATGATTTCATTAATGTTCAAACAGCATGTTTTAATGACTATTTTTGTGAATGTAGTTTAGGTCAAGGGGATTTATATGGAATAGCTTTCTTCTGAAGCGATCGTACACACAGAAGAAACTGCGTTTAAGTGCCTTGCTCAGGGGCACAATGGTGATAGATCAGGATTTTATTCACAGGAACGTGGTTTATGGTTACACCAAATTTGAGATTGAAATTTGCAACCGTTCTAGTTAATTGCCCATGTCCTCTAGTAGCGTACGCATTACAACCACAGCCTTACCCCGAGTCTAACAAACTGGCCTGACTAAATGAACTTTAACAGCCTCAGGGACTAAGGGAAATACACCTGTGTAGATTTCTTGAACAAAACCAGTCTTCCGTCTTTACTTCAGCTTATAGATTCTCCCGGCTTTGCCTTTTATTACCGTTTGTCCCAGTATTCCAGTAATCAATGCACAAGGCTCAGGATGAGTCGTCAAGTATGTTGGTATAACaatgatgtgtttttataaGTTGCAAAGATTTAAATATGAACTGATGTATTGACTACCTACCGTGAAAGGTATTGCTGAAAGTTAAGGAAGTCGGTTAGACAATTCCACTTGTGGAAGATGCATGGCCCTGTGTTAtcatatgcatttgtttgtatatcGGTTTTGTTGCTCTTTGCCAAAATGACAATGTTTAGCTTGTCTACCGTTCCAGGTTTACCACTCGAACCAAAGACCTCGTTTTTCAATGCATACTACATCGTGTCATGTTGCATGtgttcattttttgcattttctgaaaGATTTATGCAGCATTCCCGTTCTTTAGCCCTTTGATTCCAGAACAAAAcgttttgttgggttttttttcatgaatttcaGGCCAACCTGTGTATTTCTCACTGGACCTCTGACTGAGTCTTTTCAGTCCTGTTGCACTGAACACCCGCATTACCCGATCTGACGCCACCCAGGACCCAGTACATTTGTAGCACAATgattatttgtttctgtttgtttgttttgtttgttaaatgcatcttttttgtattttgcactGAACCATTTCTGTGCTAATTTGTGCAATACTGCTGTAAATAAAAGCCGCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140447 lncRNA downstream 41068 18916245 ~ 18916650 (-) True G94941
TU140317 lncRNA downstream 330406 18623483 ~ 18627312 (-) True G94849
XR_006252272.1 lncRNA downstream 396249 18545571 ~ 18561469 (-) False LOC122356088
TU140305 lncRNA downstream 413734 18543652 ~ 18543984 (-) True G94845
TU140303 lncRNA downstream 417018 18540385 ~ 18540700 (-) True G94843
TU140483 lncRNA upstream 103061 19078560 ~ 19078839 (-) True G94961
TU140501 lncRNA upstream 194369 19169868 ~ 19170089 (-) True G94978
TU140529 lncRNA upstream 226344 19201843 ~ 19208269 (-) True G94997
TU140608 lncRNA upstream 310538 19286037 ~ 19287424 (-) False itga9
TU140625 lncRNA upstream 450064 19425563 ~ 19427926 (-) True G95068
XM_043254727.1 mRNA downstream 124770 18830268 ~ 18832948 (-) True LOC122356218
XM_043255935.1 mRNA downstream 148138 18780375 ~ 18809580 (-) True slc29a1a
XM_043255934.1 mRNA downstream 154173 18780375 ~ 18803545 (-) False slc29a1a
XM_043255933.1 mRNA downstream 160058 18780375 ~ 18797660 (-) False slc29a1a
XM_043255932.1 mRNA downstream 177479 18777668 ~ 18780239 (-) True LOC122356860
XM_043255910.1 mRNA upstream 332 18975831 ~ 19008866 (-) True LOC122356839
XM_043256191.1 mRNA upstream 246557 19222056 ~ 19244847 (-) False LOC122357016
XM_043256190.1 mRNA upstream 246557 19222056 ~ 19244842 (-) True LOC122357016
XM_043256196.1 mRNA upstream 270105 19245604 ~ 19247578 (-) True zmp:0000001138
XM_043256180.1 mRNA upstream 282887 19258386 ~ 19266509 (-) False LOC122357009
TU140311 other downstream 284825 18545581 ~ 18672893 (-) True LOC122356088
TU140313 other downstream 284825 18545581 ~ 18672893 (-) False LOC122356088
TU140314 other downstream 284825 18545581 ~ 18672893 (-) False LOC122356088
unassigned_transcript_1930 other downstream 1238012 17719634 ~ 17719706 (-) True trnav-aac_26
unassigned_transcript_1929 other downstream 1238539 17719107 ~ 17719179 (-) True trnav-cac_10
XR_006252356.1 other upstream 892514 19868013 ~ 19907062 (-) False disc1
XR_006252430.1 other upstream 1168097 20143596 ~ 20143727 (-) True LOC122357145
TU141250 other upstream 1504426 20479925 ~ 20486704 (-) True G95520
TU141252 other upstream 1505944 20481443 ~ 20486704 (-) False G95520
TU141235 other upstream 1513286 20488785 ~ 20492076 (-) True G95510

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00013683 True 6392 lncRNA 0.35 2 NC_007124.7 47353962 ~ 47361276 (+)
grasscarp (Ctenopharyngodon idella) TU800105 True 4041 lncRNA 0.40 2 CI01180000 147933 ~ 172066 (-)