RNA id: TU140529


Basic Information

Item Value
RNA id TU140529
length 3478
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G94997
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 19201843 ~ 19208269 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gcatttattttgtattttttcaatacAGGACGTGTCTTTTCAGGCGTCAAATAGACAGTTATTGAACTTCGGAGTGCGTATATCCAATCttttctgatttcttttttagTAAACCATAAAAATCACTTATGAATTCGTACGACAGCGACAACAAAGTGACCCtttctcaaaatgttttaatggaagattttaactaaacattcattgcaatttttgttatttatatttaacttttcgCTTTTTCATTTGATAACTCCATTCAACACACCAACAGTGGAAACAgacagatttcatttatttaattgcaactTAATCAGGTTTTGCTGATGTGAAATCTTTAAGCTTTGCACTTAAGTGATAATTATTGCATACGAAACAGATTGTATTGACACTGTAATCATAAGAGAACATTTCTTGgtaacagtttttaatattaaatttcgATTCGAACGAAttcagagtattagtagaccaGGTTAACATTTCATATGACATTCAAGGCATTTAAGCTTTATTTAGTTAGCAGTATTTATTAAGATATTGTTCATAATGGCATTAATTGCACGCTTTCAACTTTAAAATAAGGCACATATCATTGTACCTCAAtcaaaaagtacaataatatACTTCACACGTTTAAAACACTTTCTCTAAAGATTCTGCGTTTCTTCATGTCAGTTTAACTTCgaagttaaaatgtaaaaaacactatatataaaaaaacacttttcctttatatttacaaaatgcatttctaatatACAAATTGGATTCTATGCAAAAACagtcgacaaaaaaaaaaatcctaaaatcaCAATACTTTAGCTTAATTTTACCATTTCATTGCATATCGATGTCTCTTCATCATTTTTTACGTCACAGTTGTGCGGTCTGTACTTCACGCATTACGGCAAAAACAACACCACGGTAAAGCTTTCAGAGAGTTTAGGGTCCATCGGGTTTCTGTGCAACTGCGAAATGATTcgttttttgacattttgcaagACGTGAAATCAGGTATTTAATGCCATGGAAAGACGCATGCACCGCCGTTCAAATGTTTGGAGTtgaattactttaaaatgtgtctCTTCTTACTCACCGAGGCTGGTTTCATCTGaccaaaacacaataaaaacaacaatatttatgtaattatgttcatgtaattacttaaaatgtttGGTCAATggatgcagtgaatgggtgccgtcggaattaTAATCCAACAGCCATCGCGATAAAGTAATTCATAAACGGCATAAATCGATAAGCATGTTTTAAACATCAAACgattgcttctggctaaaatatgaACCCATAATCCAAAATATTCctaaaaagatcaaataaaaaaacctggAGAGAATAttcacagatcaagcactgtttatgAGCTAAAACAGACCTAAACTAACatgccttaatgatggatttgtttttttttacaaacacgcATCTTTTCACTTCTCAAGATGTTAAACAACGGACTGGAGTGATGTGGGATATcgtgatgttttcatcattctgacggcacccattcaccgcagtgCATCCCTTGGCGAGCAAGCGAAGCGATGCTGCTCTCCACCCGAACCCGTTCTAACGAAAAACACAAAGCTCATCTTCATCTCGACAGGCCcgcattttcatttctgggtgaactattcctttaagtcgAGTTTGGCAACAATCCGAAACCAGTTCGAACGAAACCAGCCGGACAGCGCAAAGCAAGCGCATCGGTTCGGTGATGCATCAGAGCAAGCGCGTGGTGTCTGCCGCCGCCGCCGCGTCCCGGGCCGAGTCGTCCTCTTCGGAGAGTCCGCGATTCAACAGCGGCTCATCCGCGGCGCTTCTCGCCGCATTGTCCCCGCAGGAAATGACCACAACGTACCGGTCGTCCTCCGCGTCTGTGCTCTCGTGGACGTCCGCCGTCACCACTGACGTGTCCGCGGCGGGCCGACTGCAGGAGGGCGAGGACGTGAGCACAGGGCCTTCCTCCGGCGCGCCGGGTAACTCCTCTTCCTCCTCGGGGAAGCTGGTGTTGATGTAGATGAGGTCTCTTCTGCTGGACACCGCGGGAAGCTTCCCCGCCAGACTCTCCAGCCTCTTCCTGACCTGTGTGAAGTCGGGTCGGTCCACCGGATCAGCTCTCCAGCAGCCGAACATGATGTCGTAGCTGAAAAACGAAAGCACTGGACATTCAGGTTCAAATATACTGAAAAACATCAACCCTACTGTACAGGAAACATCAACCTTGCATATGAAACATTACCATATTTCATTCACAAAGTCTTGTAAATAAGCAGCAGGTTCAAAACTTGTTGCACACGCTTTACTGCCGGATCTTTTACAGTATAATTGTTTTAGTATAATTAAAGGCCACATCATGTGCTTCACGTGTCTTTTTGCCAAATATGGGATTTTGAGACACGTTTATTTtggatgcgattaatcatttgttaGCACTACACTTTAGCGTAATGTACTTCACAATAACATGAAtgcgttttaaaaacaaatagggTCACTTTTGATTTTGCCGGATTTTTATTGCCATTGTTGTATTTGACACGAGCAGCTCACGGCGGTTTTAAACACACTCACAGTTCATCCAGACAGTCGCTCGGTTGTTTCAGCCGGTTTCCCTCGAGGAGGTAATCGTAAATCTCATGGTTTTGTACGCCAGGGTACGGGGTCATTCCTCGAGTGGCTATTTCCCACATGGTCACCCCAAACGCCCACTAAAGAGAGAACAAACATCAGAACTACTTTCTGTTCAAAGAACCCTGAAAATAATGAACAGCTTTTCAACATCGATCGCAatcagaaaatcagcatatcagaacgAGTCTGGAGTgaaactgcagctttaaatcaCAGGAATATCACAGAAATCACAGAAACCAACCACTCCGAattgaaatatttcagaatattgctgtttttactgtatttttgattaaataaacacagcccTGGTGAGCTCGAGAGATTCAAAACAGTCTGGTAGTTAAAATAGAAGTTAACTGATCACTGAAAGACACTGAAAAACAGCAGACGTCTCTTAAATTAGGACTAAATTGAACAACGAAGATGGCTTGGATGAGACTTCCTACCACATCGCTTTTCACCGTGAAGACTCGGTCAGCGAGGCTTTCCACAGCGATCCATTTGACAGGCATCTTGGCTATCCGGCCCTGTCTGTAATAGTCACCACTGTAGATTTTCTTTGACAGGCCAAAATCGGCGACGCACACGCTCATATCGTCACGTAACCTGCGGGGAAAAAAGTTGATTGCTTAAACATGCACAGAGACTTCAAACGTTCAAATAAACAGGTAACTGGCACAAGATACaagcattttactttttaaagcattcaaaataacagttttcgtgtactgtgcatatatattacgtatatatttacagtatatattctgaaaataaactATTCAAACTATTAATAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140501 lncRNA downstream 31754 19169868 ~ 19170089 (-) True G94978
TU140483 lncRNA downstream 123004 19078560 ~ 19078839 (-) True G94961
TU140438 lncRNA downstream 226344 18957718 ~ 18975499 (-) False LOC122357020
TU140447 lncRNA downstream 285193 18916245 ~ 18916650 (-) True G94941
TU140317 lncRNA downstream 574531 18623483 ~ 18627312 (-) True G94849
TU140608 lncRNA upstream 77768 19286037 ~ 19287424 (-) False itga9
TU140625 lncRNA upstream 217294 19425563 ~ 19427926 (-) True G95068
TU140683 lncRNA upstream 383603 19591872 ~ 19593376 (-) True G95110
TU140737 lncRNA upstream 461440 19669709 ~ 19670331 (-) True G95147
XR_006252305.1 lncRNA upstream 609784 19818053 ~ 19835653 (-) True LOC122356282
XM_043255910.1 mRNA downstream 192977 18975831 ~ 19008866 (-) True LOC122356839
XM_043256197.1 mRNA downstream 226319 18957703 ~ 18975524 (-) True LOC122357020
XM_043254727.1 mRNA downstream 368895 18830268 ~ 18832948 (-) True LOC122356218
XM_043255934.1 mRNA downstream 398298 18780375 ~ 18803545 (-) False slc29a1a
XM_043256191.1 mRNA upstream 13787 19222056 ~ 19244847 (-) False LOC122357016
XM_043256190.1 mRNA upstream 13787 19222056 ~ 19244842 (-) True LOC122357016
XM_043256196.1 mRNA upstream 37335 19245604 ~ 19247578 (-) True zmp:0000001138
XM_043256180.1 mRNA upstream 50117 19258386 ~ 19266509 (-) False LOC122357009
XM_043256181.1 mRNA upstream 50117 19258386 ~ 19265986 (-) True LOC122357009
TU140311 other downstream 528950 18545581 ~ 18672893 (-) True LOC122356088
TU140313 other downstream 528950 18545581 ~ 18672893 (-) False LOC122356088
TU140314 other downstream 528950 18545581 ~ 18672893 (-) False LOC122356088
unassigned_transcript_1930 other downstream 1482137 17719634 ~ 17719706 (-) True trnav-aac_26
unassigned_transcript_1929 other downstream 1482664 17719107 ~ 17719179 (-) True trnav-cac_10
XR_006252356.1 other upstream 659744 19868013 ~ 19907062 (-) False disc1
XR_006252430.1 other upstream 935327 20143596 ~ 20143727 (-) True LOC122357145
TU141250 other upstream 1271656 20479925 ~ 20486704 (-) True G95520
TU141252 other upstream 1273174 20481443 ~ 20486704 (-) False G95520
TU141235 other upstream 1280516 20488785 ~ 20492076 (-) True G95510

Expression Profile