RNA id: TU140737


Basic Information

Item Value
RNA id TU140737
length 563
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G95147
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 19669709 ~ 19670331 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAGACCTCGATTGTTGGCGTTCATCGGCCTAAGTGACTCGTGAGCATCTTTTTAAACACGCTTCGCACATTTATCAACATCTCGGAGTAAAACGTGACAGCAGGACGTCACTTTCAAAGCCATCCCCTCTAGATGCCATTAAAATATCAAAGagagatataaaaaataaataaaaatcgatAGACGGCTATGAATGAGCACAGCGGCTCAGGTGAAGCAAATGTCTGCATTTGGTCTTTAATCGTTCGCGTGGGAGGCTTTTAacggccacacacacacacacacgcacacacagacacacacacagacacacacagacacacacacacacacacagacacacacacagacagacacacacagacacacacacacacacacacacacacacacacacacacacacaaacacgcacacacagacacacacacacagacacacacacacacacaaatgttgaaatgtttagaggttttttgtttttttttgaagtaattaatatttaaacaagaaATCGATCGAAAGTGACTGCAGACATTTACGGTGTCTTGTGATCTTTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140683 lncRNA downstream 76333 19591872 ~ 19593376 (-) True G95110
TU140625 lncRNA downstream 241783 19425563 ~ 19427926 (-) True G95068
TU140608 lncRNA downstream 382285 19286037 ~ 19287424 (-) False itga9
TU140529 lncRNA downstream 461440 19201843 ~ 19208269 (-) True G94997
TU140501 lncRNA downstream 499620 19169868 ~ 19170089 (-) True G94978
XR_006252305.1 lncRNA upstream 147722 19818053 ~ 19835653 (-) True LOC122356282
TU140781 lncRNA upstream 175970 19846301 ~ 19846534 (-) True G95190
TU141149 lncRNA upstream 250671 19921002 ~ 19921640 (-) False LOC122357123
TU141188 lncRNA upstream 405040 20075371 ~ 20075937 (-) True G95469
XR_006252294.1 lncRNA upstream 437860 20108191 ~ 20140958 (-) True LOC122356209
XM_043254966.1 mRNA downstream 137706 19505862 ~ 19532003 (-) False fbxo11a
XM_043254965.1 mRNA downstream 137706 19505862 ~ 19532003 (-) True fbxo11a
XM_043254703.1 mRNA downstream 209312 19429836 ~ 19460397 (-) False kcnk12
XM_043254702.1 mRNA downstream 209312 19429836 ~ 19460397 (-) True kcnk12
XM_043254856.1 mRNA downstream 269819 19363572 ~ 19399890 (-) True golga4
XM_043256074.1 mRNA upstream 9914 19680245 ~ 19685333 (-) True ntpcr
XM_043256075.1 mRNA upstream 15588 19685919 ~ 19688933 (-) True map10
XM_043255586.1 mRNA upstream 192199 19862530 ~ 19907061 (-) True disc1
XM_043255587.1 mRNA upstream 192199 19862530 ~ 19903482 (-) False disc1
XM_043256389.1 mRNA upstream 238864 19909195 ~ 19921669 (-) True LOC122357123
TU140311 other downstream 996816 18545581 ~ 18672893 (-) True LOC122356088
TU140313 other downstream 996816 18545581 ~ 18672893 (-) False LOC122356088
TU140314 other downstream 996816 18545581 ~ 18672893 (-) False LOC122356088
unassigned_transcript_1930 other downstream 1950003 17719634 ~ 17719706 (-) True trnav-aac_26
unassigned_transcript_1929 other downstream 1950530 17719107 ~ 17719179 (-) True trnav-cac_10
XR_006252356.1 other upstream 197682 19868013 ~ 19907062 (-) False disc1
XR_006252430.1 other upstream 473265 20143596 ~ 20143727 (-) True LOC122357145
TU141250 other upstream 809594 20479925 ~ 20486704 (-) True G95520
TU141252 other upstream 811112 20481443 ~ 20486704 (-) False G95520
TU141235 other upstream 818454 20488785 ~ 20492076 (-) True G95510

Expression Profile