RNA id: XM_043256389.1


Basic Information

Item Value
RNA id XM_043256389.1
length 1574
RNA type mRNA
GC content 0.52
exon number 8
gene id LOC122357123
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 19909195 ~ 19921669 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTGCTGCGCGGTGTGACGCAATTAAGACGCGCGGGTCCCGTGTAAACAATGGAAGACCGTTCGCGCGCCGGTGTTCAAAATAAACCGAATTACGCGCAAAACGCCGTTTGTCCAACTAATACTCGACGCTGACGACACGCTGATGAAAAACGCCGTTTCTAGGTTTCATGTTTGAGAAAGTACGTCACCGCAGAGACGCGCGCGAAAAGCCTCGACGAAGGCGTCCGGCTGGATTCAAGCGCACCGAAACCCGCAAGAAGCTGGTGAAATAAAAGCGGTTTACTGTCCGTCCTCTCCCGCACGTGTCCGGCGAAACACACCACACCACAGAAATGAGTAAACGAGAAGACGACGGATGCGGCAGAAAACGGAAGACCGACGCTGGGTGTAAACCGGAGGACCGCGCGAATCCGGATTCAGCCGTCATAGCTGCTTTCAAAGTTTTCCAGCAAGAACTCGACACCAAGCACGATAAATACGAGCGTCTGGTGAAGATCAGCGATATCACCATCGAGAGCAAACGGACCATATTCCTCCTGCACAGAGTCACCAGTcgCCCGGACGCCGAGGAGATCCTCACCGAGGCTGACGTCAAACTGGATGCAGTGAGGCAGAAGATCGGGCTGATCGCAGAAGAACTGAAAGGAGAAGATTTACACCAGTTTCACCGGGCGTTTACTCCAGGCATTCAGGAGTACGTTGAGGCCGTGTCCTTCCATCACTTCATCAGACATCGCTCCCTGATCAGCCTGGAAGAAATCAACGCTCGCCTGGTCTTCATGAGAGACAATAAGggtgAAGGCGAGGTCACATGCACAGGCCCGAGTGTATTAACCTTCCAGATAACGCCGACCGACTACCTGCTGGGCGTCGCCGACCTCACGGGTGAACTGATGCGCATGTGCATAAGCAGCGTGGGCAACGGAGACATAGACACGCCCTTCCAGCTCAGCGGCTTCCTGCGGGAAATCCACGACGGCTTCTCCTACATCGGGAACACGGGGCCCTACGAGGTGTCCAAGAAACTGCACACGCTGCGGCAGAgcctggggaaggtggaggacGCGTGCTACACCCTGCGCGTGCGCGGATCCGAGATTCCCAAACACATGCTGGCCGATGTGTTCGCCAGCAGGGCGGCGACGCACCTGGACCCGGAGGAGCCCATGGTGTGAGACGCGTCTCCTTCCCTGCGTATGTCGGACTTTGCTATCTTCGTTTCAATGGTTGCATGTTGTTAACGCGTCTAGTTCTTTAGTTTTGAGCTGGTGCATTTCATACGCATTGCTAAATGGTTAACTGATCTCGTTCCTTCTAATCTTCCTGAAAGTTATAAACGTGTTTaccattattttgaaatcaaacaGCCTCAGAGCTGTcaataaaactcttttttgGTACAAACGGCTCCATCTCAGCAGATCACTTTAGGGAGACCACCATATTATAGGAGAGACTCATGTATTTCTTAAACACcccatttaattgattttaccCAGCTGTACTCATTTTGtcgtattcatttatttttaatcaagaaTAAAGTTTTTCCAGAGATGGTAATGACAATGAG

Function

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140781 lncRNA downstream 62661 19846301 ~ 19846534 (-) True G95190
XR_006252305.1 lncRNA downstream 73542 19818053 ~ 19835653 (-) True LOC122356282
TU140737 lncRNA downstream 238864 19669709 ~ 19670331 (-) True G95147
TU140683 lncRNA downstream 315819 19591872 ~ 19593376 (-) True G95110
TU140625 lncRNA downstream 481269 19425563 ~ 19427926 (-) True G95068
TU141188 lncRNA upstream 153702 20075371 ~ 20075937 (-) True G95469
XR_006252294.1 lncRNA upstream 186522 20108191 ~ 20140958 (-) True LOC122356209
TU141210 lncRNA upstream 193057 20114726 ~ 20140686 (-) False LOC122356209
TU141230 lncRNA upstream 315009 20236678 ~ 20238227 (-) True G95506
TU141232 lncRNA upstream 343057 20264726 ~ 20275256 (-) False LOC122356211
XM_043255586.1 mRNA downstream 2134 19862530 ~ 19907061 (-) True disc1
XM_043255587.1 mRNA downstream 5713 19862530 ~ 19903482 (-) False disc1
XM_043256075.1 mRNA downstream 220262 19685919 ~ 19688933 (-) True map10
XM_043256074.1 mRNA downstream 223862 19680245 ~ 19685333 (-) True ntpcr
XM_043254966.1 mRNA downstream 377192 19505862 ~ 19532003 (-) False fbxo11a
XM_043255840.1 mRNA upstream 74980 19996649 ~ 20025261 (-) True LOC122356781
XM_043255837.1 mRNA upstream 104000 20025669 ~ 20036473 (-) True LOC122356780
XM_043255838.1 mRNA upstream 105635 20027304 ~ 20036473 (-) False LOC122356780
XM_043255834.1 mRNA upstream 105635 20027304 ~ 20036473 (-) False LOC122356780
XM_043255839.1 mRNA upstream 106818 20028487 ~ 20036473 (-) False LOC122356780
XR_006252356.1 other downstream 2133 19868013 ~ 19907062 (-) False disc1
TU140311 other downstream 1236302 18545581 ~ 18672893 (-) True LOC122356088
TU140313 other downstream 1236302 18545581 ~ 18672893 (-) False LOC122356088
TU140314 other downstream 1236302 18545581 ~ 18672893 (-) False LOC122356088
unassigned_transcript_1930 other downstream 2189489 17719634 ~ 17719706 (-) True trnav-aac_26
XR_006252430.1 other upstream 221927 20143596 ~ 20143727 (-) True LOC122357145
TU141250 other upstream 558256 20479925 ~ 20486704 (-) True G95520
TU141252 other upstream 559774 20481443 ~ 20486704 (-) False G95520
TU141235 other upstream 567116 20488785 ~ 20492076 (-) True G95510
TU141237 other upstream 571973 20493642 ~ 20496864 (-) True G95511

Expression Profile