RNA id: TU141782


Basic Information

Item Value
RNA id TU141782
length 5721
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G95902
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 22114696 ~ 22120442 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCACACTGATAGTTTATTCATACTTTAATGATCGTCAAAATCTCTATGGGTTGCCAAAATATTGAAGAGAATCTATGTATACGTACAGAATCATGCCGTCCACGTTACAATGGAACACGAGGAGAAAGTCTGGTCTTCACTGGTCTGAAGTTAAACCAGGTCCAGACCGGCTCCAGATTAAACATTCCAGGAGTTCACTTATTACAAGAAATGCTTCTTTACAAATGTTACGGTGTTTCTATGAGCTTTACACactacgcacacacacacacactcgctcgctcactctctctcacacacacacacacacacacacacacacacacacgctcgcagGCACTCGTTTGGATTAGAAATGGCTATGCAAATGGTACAAAAGCTTTGGCGTTTTTGCCTACAAGTTGTGCCTGCACACTTGAGAGAGATCTTAAACAAGACGCGGCTTCATAAAACCTCTCAGTATCGTATCGTCTGTATCGAAACTCGCTGATCTCAGCACGTCCACATAAAACTGAGGACAATGCCGGCCTTTTCACTATGTACATGTTTACATGATGAAGCGGTGAGATTACGGTAGTGATTCGCTACTCGTGTGCCGATGCCACTTACTGAATaaatgctacacacacacacacacacacacacacacacacacacacacacacacctataaaTCAATCCTAATCGGGCGTCTTATAGACACTGATAAGCAGCAGAGATGAAGGACCGGCGTCTCATCAGACCTTCACTGAGTTTAAGAGTCTAACAGTCAGAGAGGAGTTTGGCAACGTGTGAGCAGGAAGGGTTCAAGCAGCGACAGACAGAAATATACTAGagatatcatcatcatcatcatcatcatctccaaCAGCAGTCTGTCCTTAAACGCTGTGTGAGACTCCAGTCtcttctgttcatcaaaaacacaggaaatattagtttaaaacaGGTTTTGTGTGCGAACGCGTGTTAAAGTGTCActcatttctgtgattttcagcttcattgctccataatacactgatttactcaaacatttctgatgatCATAATGTTAAAAAGAGTTGAGCGGCTCAatatttccaattttttttttttgggagatcaatagaaagtttaaaagatagaaaaagaggTAATAAATGTCTGTAGGGACACTTTTGATCAACTGCATGCAGCCTCGATGAACGAAAGGAgacatttattgttaaaaaaaagcttttgaattACTTGAACAATATTAATGCTTGAATTAAGATGCTGCACTTCAACACATATTCagagagaaaacagctgctttaaactACAATCCCATTTGAcgtgttttactgtatttttgatgaaacgaACGCAGCCTCGAtgagaagagacttcttttagaAATCAACCAGACGCAGCTCCTCATGAACCGTATTAAAGGTTATTTACAGGAAGAGGAGAGCTCAGAGATTCAGCAGGTCTTCAGAGGAAACACCGTGTAGAGTTAAACACATCATTTCTACAGGAAACCAGTGTCCAGACCCCAAGCCCACGGAGCGGGAAGAATACAGGAAGATTCAACTTCATTCTAAAGAGTTCTCCTTTTAAACACAATCTCAATTCATTTTGATCACAAATTTTGCATCCAGTAAACAATCTTGggatatttttactggaaagcGAGACTATTAAGTATATTAAGTTTTCAAGGATTAAATATTTGcggtttattaaataatttttaagcgGGAACATCTGCTTCATTTCTAACAGGCCTGCTTCGGGGGCTTTTAAACACGTTCACGCTCATATACCTACTGTATTATTTCCAGCAGCACGACCCTGAATTCAGTTCTTGATGTCTGGCTCAAAATGATCACTTTTTCTTTTAGgccaaaaaaagcaaagatcatgttctaCGAAGAccttttgtacatttcctaccgtaaatataccAAAACCTAATGTTTTACTAGTAATATCCACCGCTAAGGACTTTTCTCACTGTTTTCCCGTCCCGTCCAGGTGATGCATAAACCTCGGTTCTGAAGAGACTGGACCCTCGAGTCGTAAACATACAAACGCTATTAAGTCGGTTACGAGTTCAGACCTCCGTGTGTTTGGTGTGATGTCGTCATACTCAAGCGAACAGCCTTACGTTGTAGAATTGCCACTAAGATCTCTATTTTACATCATGCTGAAGAGTTACGTTGCATAGAAGTTGAGATGCACCGCAGGGCGGAAGCTAGCAGCTTCCCGGAGACGAGCAGACCGAGCCGCACATGCTCAGTTTGGACGCCTCGGGTTCAGCCTCCGTCTCCTCGTCCTCCGTCCCTCCCTCGGCCTCGTCTCCTCCTGCCTCCTCCTCCTGACGCCGCTTCAGCCTGAGCGCGACACACTCGGATGAAACACACAGGCTGCAGGCACAGTTATATTTCCTAACGTTAACTTCCTTCTGGTTTAGCGATGTCTGCGTCATTGGCATCTTTTGTTGCATGTATAAAAATAGACATCACCCAGCGCACGGTCTAATAAAACATTATCCTTGTCTCATCTTGCTCCAAAAGGTGATGCATTAATTGATTTCATGCATTAAAAGCAGTGTGAGCTGAATGTGCCGATGCAAATCTGACTTTTAAGTCCTACGTTTACATCTCGcaatttggattttgttttttaaaacgatgcacaaaataaaaaattgctagATGTAGCGCCTTGACCCTACGTTAGCAtgcttgacatttttattaagacTGAACCGGCTGGAtgttaaagcatattaaaatgtaatgatgaaAATACTAAGCATGCATTGAAACgactttttttgcacaaaatgtgcagtgttttaaaaagtgtgcTTTCTCTCTTGGATTTATTCAGCAAGGCGTTGAATCCAATCATAATCATGCAACGCTGTCTTTTGTAGCGAAGAACCAAACAGTGGCGTGTTTTCTCCCGAGCGTCCCGCTCCTTAGGAGACGTTCATGAGCAGCTAACTCTTAATGAAGCTCTCGAGGAGACAGATTCACGAACAACGAGGCGGTGGTAAAAATAGCAGGAGAAACGTAAATTACAGCAGAAAGAGAGACTCGTGATCAATAACACATGACCTGATCATCAGGCCCGTGAACACACAcccttaaaaacacacacctttACTTCTTAAAGAGCTTTTCAAGAGCAAGGAAAAAATAGTTGATGTGATATATGTGCATGCTGTAAGCTTCAGTTCAGCACCAGACATATTTGTCACATACtgttttttcagtgcatttaaagCCATGACTTTATGAATTTAAGACTCTCTGCTCTGATTTATCACTCCTTGAGTCATATACAGATATACTGAGAAATGCTATAACCTAACACTAACAGAAACATTCTGCATTTTAATCActcaaaaaaagctgaattttatttCCCATATACAGATTTTACAAATGAGGATGTCTCCTAAATGAGGTCGAATTGGTTTCACATCTTCTCCCTAAAATATGGCCAAGAGTGAAAaactattcattcattaaatcataaatgcaaatttgaaataaataattctttgattaatttaaatgtatttaaaattttgttattaatgcaGAAAAGCGCTCCGTgtctgtacattttttaaatattacattaaaacgacttattatattaaataaaaatactataataaagtACATACTAGTGTTTTGAACCATACTGCAGTAAagtatattatactgtatttattaaagtaCTTACGACACTTAATGAATACTGTAGTATTATCTATAGTGCACTgagaaactgtaataaatactgtactacgctttagtttttactgtagtGTGTACTAGAATGATGTTCCTTACAGCTGAAGaagctattattttttaataaagtaatctCCCTTTTAGTCTTCCACTCTATTCATTTAcaaactgcttgttttctttaaaaataataataataaacagactCTATCTTCtctattttgttttgcatttgttaacaaaaagcaaaaaaagatttccctattattttttctttttattcattatatagtTTCAGGTCCTGTGTTAGATTTAAAGGTTTTATTGCTTCTCCTGTCTTCTTATAATCAAGCGACTGCATGTAAATATTACTGTAGTAGTTATATAAGCCCAATGAGTTCACTACGGTGCGGCTAAACATTACTACGGTGTTTTTGAACTTGCAAGGGGTTCGTGTGACACACAATAAAGATGTTTATGTTCTCACTTTTCACGGTTGAAGATCATGAACTCCTGCTGGACAACTTCAAGGCACTCCTGAAGATACTCGTTCTCCTGCGAGGAAAACAGAGAGACGTCTCGTGAGCGGGCTCTGAGCTCGGTGACCTGCTGCAGCGGCTCGCGTCGAGCTCTGAACTCTGTTCCTGCTGGAAGACGCCAGAAATAGCTCGCCGTGCTCCAGGAGAAGCTCCGGCGCTGAAAGCTTCATAATTTAATCATCCAGATAATAATGGCTCCGCTCGCTGCTTCCACGGACCGCAGGAGCTCGTCTTCGGGCCAGAGCTGATTCATCCTGATCTGATTACAGACACGCTTCGCACAAACACACggagagcatgtgtgtgtgtgtgtgtgtgtgtgtgtgaagagccGTCGCTCACGCGTGGAGACGTCAGTCAGGCTCAATATAATAAAGCCTGAGGGATAAACACCGGCCTTTACTCCGAGACGCTCTTATCTCAGGGATTACGCTCAAATGTCACACAACTATAAGAGTCAAAAGTAATTTCtcagatgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtactctcatttgtggtttatgaagAACCAAATGTGTGTAATGACGTGTACTACAAGGTAAACATGGTTTATAAGGACACTTCCTGTGTTCCCGTGAAACAAGAggcttaaaaaacacacactaaacagTGTTtcatgaaaatctaaaaatgtgagGAGTTTCCTGTAaaagaacaataacacacagtctgtacagaatcaaacattacacctatagagtccccataaaacatggaaacacaatgtgtgtgtgtgtgtgtgtgtatgagtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgagtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgagtgtgtgtgtagtgtgtgtgtgtatgtgtgtgtgtgtgtatgtgtttgtgtgtgagtgtgtatgagtgtgagtgtgtgtttgtgtgtgtgtgtatgtatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcacccACAGACTGAGAATCTTTGCTGTTGTCTCTCGATCTGTTCTTGGCCAGTCGTTTCTTCTTCTTATGAAGCGGACGAGACTCCAGAATCATCTCCTCCAGCTCAAAGGTGGGGTCGCAGTGCAGACGACCTTTCTGTTTGAGAAACACAAGGGTTATAAAAGCAAACCTTCAAACACAGTCTGAGCGTTTCTTCATCATATGTGTCTGAACAGGGTCTAAAATGCAGATCATTTACTGGCCGTACATATTTtctctttgtaattatttattaaaagggaagagatttgtagaaatgtttctcagtaatggaagtgaatg

Function

GO: NA

KEGG:

id description
ko04724 Glutamatergic synapse

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141784 lncRNA downstream 74590 22039782 ~ 22040106 (-) True G95903
TU141779 lncRNA downstream 239767 21874513 ~ 21874929 (-) True G95899
TU141539 lncRNA downstream 619543 21487514 ~ 21495153 (-) True G95715
TU141427 lncRNA downstream 1111045 21002627 ~ 21003651 (-) True G95643
TU141426 lncRNA downstream 1112852 21001337 ~ 21001844 (-) True G95642
TU141813 lncRNA upstream 15494 22135936 ~ 22136391 (-) True G95922
XR_006252426.1 lncRNA upstream 16946 22137388 ~ 22142772 (-) True LOC122357128
TU141834 lncRNA upstream 53884 22174326 ~ 22244477 (-) True G95934
TU141833 lncRNA upstream 107742 22228184 ~ 22230539 (-) True G95933
TU141841 lncRNA upstream 127614 22248056 ~ 22370625 (-) False G95938
XM_043255712.1 mRNA downstream 63010 22041455 ~ 22051686 (-) True pwwp2b
XM_043254889.1 mRNA downstream 90086 21908358 ~ 22024610 (-) True LOC122356328
XM_043254705.1 mRNA downstream 247798 21847430 ~ 21866898 (-) True valopa
XM_043256061.1 mRNA downstream 791693 21269350 ~ 21323003 (-) False LOC122356942
XM_043256060.1 mRNA downstream 791695 21269350 ~ 21323001 (-) True LOC122356942
XM_043256219.1 mRNA upstream 31593 22152035 ~ 22156844 (-) False tmem254
XM_043254898.1 mRNA upstream 37223 22157665 ~ 22183174 (-) False srfb
XM_043254899.1 mRNA upstream 37223 22157665 ~ 22183173 (-) True srfb
XM_043254790.1 mRNA upstream 64598 22185040 ~ 22227004 (-) True ptk7b
XM_043255446.1 mRNA upstream 111007 22231449 ~ 22250313 (-) False klc1b
unassigned_transcript_1933 other downstream 461015 21653612 ~ 21653681 (-) True trnag-gcc_72
unassigned_transcript_1932 other downstream 540375 21574251 ~ 21574321 (-) True trnag-gcc_71
unassigned_transcript_1931 other downstream 700825 21413800 ~ 21413871 (-) True trnag-gcc_70
TU141433 other downstream 934479 21007472 ~ 21180217 (-) True G95646
TU141260 other downstream 1543134 20570038 ~ 20571562 (-) True G95526
TU141816 other upstream 17887 22138329 ~ 22143970 (-) False LOC122357128
TU141794 other upstream 31300 22151742 ~ 22156824 (-) False tmem254
TU141795 other upstream 31300 22151742 ~ 22156859 (-) True tmem254
XR_006252351.1 other upstream 112372 22232814 ~ 22250313 (-) False klc1b
TU141832 other upstream 115662 22236104 ~ 22238570 (-) True G95932

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU801374 True 1063 TUCP 0.46 4 CI01180000 2987081 ~ 2993864 (-)