RNA id: XM_043254966.1


Basic Information

Item Value
RNA id XM_043254966.1
length 3065
RNA type mRNA
GC content 0.53
exon number 21
gene id fbxo11a
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 19505862 ~ 19532003 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgagtgtgtgtgtaaatggcTCCTCCTGCCACTGAAAACCGAAATCGGAGCGCCTGGGCAGTAAAACCGCTTCTCCGGAGCTCAGACCGAGCAGATTCCCAGTGCGATGCCCTTTAGGCTCTTATTTGCATCCTCCGAGCTCAGCACCGTGTGAGGACCCCGAGGAAAGGGCTGCAGCGGCTTGCGTTTTTCACCAGAAAGCCGTCAAATGAACTCCGTCAGAGCGACGAACCGCAGACCCCGGCGAGTGTCGAGGCCGCGCCCGGCGCCGCCTGACAGAAACAACGCAGAAAGAGATGAGGAAGTTCCTGCCGAGATGGTTGCAGAAGAATCCGGTCAGGGCGCCCAAAACAGTCCGTACCAACTTCGAAGAAAATCTCTGTTGCCGAAGAGAACAGCTTGTCCAACAAAGACCAACATGGAGGGTGCTTCCACGTCAACGACAGAAAACTTTGGGCATCGGGCAAAACGTGCCAGAGTGTCCGGAAAATCACAAGATCTGCCCGTCACCCCGGCGGAGCAGTACCTGCAGGTGAAGCTTCCAGACGAAGTGGTTCTGAAAATCTTCTCCTATCTGTTGGAGCAGGACCTGTGTCGAGCGGCCTGTGTGTGTAAACGCTTTAGTGAACTGGCCAACGACCCCATCCTCTGGAAGAGGCTCTACATGGAGGTTTTCGAGTACACGCGTCCCATGATGCACCCCGAGTCTGGGAAGTTCTACCAGATCAACCCAGAAGAGTACGAACAGTCCAATCCCTGGAAGGAGAGCTTTCAGCAGCTGTATAAAGGCGCTCATGTGAAACCCGGCTTCGCGGAACATTTCTACAGCAACCCGGCCAGATATAAGGGACGGGAAAACATGCTGTACTATGACACCATTGAAGACGCTCTGGGAGGAGTTCAGGAAGCGCACTTCGACGGTTTGATATTTGTCCATTCTGGGATCTACACAGACGAATGGATCTACATCGAGTCGCCCATCACCATGATCGGCGCCGCGCCGGGTAAAGTAGCGGATAAAGTCATCATAGAGAACACTAGGGACTCGACGTTTGTGTTCATGGAGGGGTCAGAGGACGCTTATGTAGGATATATGACGATAAAGTTCAATCCTGACGACAAATCAGCTCAGCATCACAACGCTCATCACTGTCTGGAGATCACCGTCAACTGCAGCCCCATCATTGACCACTGCATCATCCGCAGTACCTGCACAGTGGGctctgcagtgtgtgtgagcggtCAGGGAGCGTCTCCCACCATCAAACACTGTAACATCAGCGACTGTGAGAACGTGGGCCTCTAtatcacagaccacgctcaGGGCATTTACGAAGACAACGAGATCTCCAATAATGCTCTAGCAGGGATCTGGGTGAAAAACCACGGCAACCCCATCATTAGGAGGAATCACATCCATCACGGCAGAGACGTCGGGGTGTTCACGTTCGACCACGGCATGGGCTACTTCGAAAGCTGCAGCATCCACAGGAACAGGATAGCAGGCTTCGAGGTGAAGGCGTACGCTAACCCTACGGTAGTGCGCTGCGAGATCCATCACGGACAGACGGGCGGCATCTACGTGCACGAGAAGGGCCGAGGCCAGTTCATCGAGAACAAGATCTATGCAAACAACTTTGCAGGCGTGTGGATTACCTCAAACAGCGACCCCACGATCAGGGGGAACGCCATATTCAACGGCAACCAGGGTGGTGTTTACATATTCGGCGACGGTCGAGGTCTCATCGAAGGGAACGACATCTATGGCAATGCTTTAGCCGGAATCCAGATCCGGACCAACAGCTGCCCGATCGTCCGGCACAACAAGATCCACGACGGACAGCACGGGGGCATTTACGTGCACGAGAAGGGTCAGGGGGTGATCGAGGAGAACGAGGTGTACAGCAACACGCTGGCCGGTGTGTGGGTGACCACGGGCAGCACGCCCGTCCTGCGCAGGAACAGGATACACAGCGGGAAACAGGTGGGCGTTTATTTCTACGACAACGGTCACGGAGTGCTAGAAGACAACGACATCTACAACCACATGTACTCTGGAGTTCAGATCAGAACCGGCAGCAATCCTAAAATTAGGCGGAATAAGATCTGGGGTGGACAGAACGGGGGAATTCTTGTTTACAATTCAGGTTTAGGCTTCATCGAAGACAACGAGATCTTCGACAACGCCATGGCTGGGGTCTGGATCAAGACCGACAGCAACCCCACGCTCCGCAGGAACAAGATCCACGACGGCCGGGACGGAGGAATCTGCATCTTCAACGGAGGACGAGGGCTGCTGGAGGAGAACGACATCTTCAGGAACGCTCAGGCTGGAGTCCTCATCAGTACTAACAGTCACCCTGTGCTGCGCAAGAACAGGATATTCGACGGGTTTGCTGCCGGTATTGAGATCACGAATCACGCGACGGCGACACTAGAAGGCAATCAGATTTTCAACAACCGCTTCGGTGGACTGTTTCTGGCGTCTGGCGTCAACGTCACGATGAAAGACAACAAAATCATGAACAATCAGGATGCCATAGAGAAAGCGGTGAGCAGAGGTTTTTCTGTGACTGCGGAGCAGGGACTCTGTCGAACCCGTGCACGCTCGCCGGAGAGCCCACGCACGACACAGACACGCTGTACGATTCGGCGCCCCCTATAGAGTCCAACACACTGCAGCACAACTGAAGCTCAGATGAGATCACACGCtagaaataattcaattttactCCAACAGACTCTCGGAGAGAGAAAGCGTCGCGCGAACGCTGAAaggaaacatttctatttaacaGACGTTCTGCTGTGGACTCGGCGAGGACTCAGGATGACGAGAGAAACGGACCCAGAGCGTTTAGGCTCCATGCTTCCCGTGCAGCCGTTACCGCGCTCTTGTATATGTACGGAAAAAAAAGACCCAGCACTTCAGTTTTGCTTtcatttccttttgtttttgtttttttaaagatgttgaGTTCTCGAGGTTTGATTTTAATGCTTTCTCATGTAGTTTTGTATTTTCAAGCAAAAA

Function

GO:

id name namespace
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140625 lncRNA downstream 77936 19425563 ~ 19427926 (-) True G95068
TU140608 lncRNA downstream 218438 19286037 ~ 19287424 (-) False itga9
TU140529 lncRNA downstream 297593 19201843 ~ 19208269 (-) True G94997
TU140501 lncRNA downstream 335773 19169868 ~ 19170089 (-) True G94978
TU140483 lncRNA downstream 427023 19078560 ~ 19078839 (-) True G94961
TU140683 lncRNA upstream 59869 19591872 ~ 19593376 (-) True G95110
TU140737 lncRNA upstream 137706 19669709 ~ 19670331 (-) True G95147
XR_006252305.1 lncRNA upstream 286050 19818053 ~ 19835653 (-) True LOC122356282
TU140781 lncRNA upstream 314298 19846301 ~ 19846534 (-) True G95190
TU141149 lncRNA upstream 388999 19921002 ~ 19921640 (-) False LOC122357123
XM_043254703.1 mRNA downstream 45465 19429836 ~ 19460397 (-) False kcnk12
XM_043254702.1 mRNA downstream 45465 19429836 ~ 19460397 (-) True kcnk12
XM_043254859.1 mRNA downstream 105972 19363572 ~ 19399890 (-) False golga4
XM_043256074.1 mRNA upstream 148242 19680245 ~ 19685333 (-) True ntpcr
XM_043256075.1 mRNA upstream 153916 19685919 ~ 19688933 (-) True map10
XM_043255586.1 mRNA upstream 330527 19862530 ~ 19907061 (-) True disc1
XM_043255587.1 mRNA upstream 330527 19862530 ~ 19903482 (-) False disc1
XM_043256389.1 mRNA upstream 377192 19909195 ~ 19921669 (-) True LOC122357123
TU140311 other downstream 832969 18545581 ~ 18672893 (-) True LOC122356088
TU140313 other downstream 832969 18545581 ~ 18672893 (-) False LOC122356088
TU140314 other downstream 832969 18545581 ~ 18672893 (-) False LOC122356088
unassigned_transcript_1930 other downstream 1786156 17719634 ~ 17719706 (-) True trnav-aac_26
unassigned_transcript_1929 other downstream 1786683 17719107 ~ 17719179 (-) True trnav-cac_10
XR_006252356.1 other upstream 336010 19868013 ~ 19907062 (-) False disc1
XR_006252430.1 other upstream 611593 20143596 ~ 20143727 (-) True LOC122357145
TU141250 other upstream 947922 20479925 ~ 20486704 (-) True G95520
TU141252 other upstream 949440 20481443 ~ 20486704 (-) False G95520
TU141235 other upstream 956782 20488785 ~ 20492076 (-) True G95510

Expression Profile