RNA id: XM_043255587.1


Basic Information

Item Value
RNA id XM_043255587.1
length 3377
RNA type mRNA
GC content 0.50
exon number 14
gene id disc1
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 19862530 ~ 19907062 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCAAACGGATTGGCGCTTTCTCCTCAAACGTCCCCTTTTTCCTCTCCGTGATCTTCTCGGTATAACGTCGTGCGCGTGAAACGCTCACGAGCAGCCAATGGGAGGCCAAGTAAAGCAGAAGCGTGTTTGAAGAGGGCCTCTCTAATCGACTAAGGTGGTGTGAGCCCGGCGGCGGGAAGCCATCGCAGGAGGAGCGTGAGACGCCCGGGATGCATGCGCTCCGAGCCATGCGACTCTGACCGAAGACATTCGCAAACCGCTTCTGGCTCGTCTGCTAGCGAGCACGCTCAAAAGAGCACTTCCAAATTACCCAGCAGCCCCAGCGAGCGATGGCTCGAGGAGGTTTTCCACAGAGACGACGGCCGGGACTCTCCCGAAACGCACCGTCTGCGCGGCGCTGAGGAAAAACCCCCAATGCCACCGAGCGGCGCTTTCAATTCCAGCTTCAGTTTCATTCAGCAGTCCCTAGAAACGAGCGATCCGTTAGACGTCGGCACGAGTGATCGACTCAAGCCTGAAACGTCTCACTCCGATGCTTTAACAAATCCCTTGAGCCAATCAGAGATCGGCGCTGTTCcgatcagccaatcagaacacgAGCTTTTCTCCGGTGGTCAACCAAAACGTGTTTTATTGGACCGAGAGCTGTGGCTAGCGGACCTGGATGTACAGGTATCGTCCTCCGCGAAGGAAAGCATCCAGGACTCGGACTCCGGCTCTCTGGACACCGAAGTCACGTCTTCGTTCTCGATCGACTCGTCGGACTCGGCCTCCTCGGTCACGTCCGGCTACGACAGCGCGACCCCGTCCTCCGAGCAGAGTCGAGGCGGTCCGGGGAAGAAGTACGAGGACGCTCTTCAAGACTGTCTGCAGAACAATCGCACAAACACCAAGATTGAGTCCATAATGATAAAGCTTCAGAGACTACAGGACAAAGCGGTTCTCGATGATGATTACGACACAGcCGAGCGTTTTGGTAAGAAGCTAGAGGAACTGAGGAGAGAGCGAGCGACGCTTAAGCCTGGTTTACCATCCAGACATCCGGAGGTCACTGGGTTTCTGGAGCGTCTCAGATCGGCCGTTCACAGCGTCATCCACAGGACGGACACACACTGCAGGCGAAGCGGTGAATCGAGTGACGATCAGGGATCAGGCAGCTCTCAGAGCCGCGCTCGAACACGGGAGAAACTGTTAGAGGAAAAACTCAGAATTCAGAAGGAGGTGTGCGATCTTCAGCGGAGGCTGCGGGAGCTGCAGGAGCAGGGCAGAGCTGTGGAGGAGCAGCTGGAGCTGGACGAGCCCGTCCCCGGAGCCTGTGATCCCGCTCAGCTGAGGCTGGTGTCTCGAGCGCTGGAGGACATGATCAGCTCTGAACACCGGGCTCAGATCGACGTCTCTCCACCCGAGGAGATCGTCAGACTTCAAGAGCAAGAGCGAGCACTGAAATTATCTATCAAAGAGACAACGGCTAAAGTGGTGATGAGTCAAAGGCTGGGCTCCAGTCTGCGGAGGAAGGTCAGCGAGAGTGAAACACAGCTGCTGGCTCTTCATGAGGCGAAGCTCACGGCCATCTCAGGAAACGACTTCAGCAGCGCGAAGGAGCTGAAGGCAGAAATCAGGAGCGCGTACGGTGAGAGAGATCGTCTGGAGAGCCTGGAGAGGAAGCTGAAAACTCTGAGCACAGGAAGCGGACGGGATCTGAGCCGCATGAAGGAGCAACACAACCAGATCAAACTGGAGCTGCAGGAGAGAGAAGCCCAGTACGAGCACAGTTTAAAGGAAAACACTCTGAAGTATATTGAGCTTCTGGAGGACAGACTTCACAGCTGTGGAAGCCCGGCGCTGGAACACATTTGGGAGGCTGATTTGGAGGCTTGTCATCTGCTCCTGAAAGGCCTCGACCAGCGCACCTCCAGCATCTCGGCACCGGAGGATCTTCCCTCCATCCCTGGATCGGGTTCAGATGTCCTGCCCTTCACTAAAGAGGAAGCGGACTGTGCCATGCTGACCGCATTAGGGGGCCGCTGGTGCCCCGAGGCTGACCTCCAGCACTCAGAGTTCACCAAGAAATTAGAGGAGTTTCTCTTCTGTTTGGAGGACGCGTCTCCTGAGgATCTGTGTGGAGAGACGACAGAGATGACGGAGCGCTGTGAACTCATCAGTGAGCGACTGCATTACCTGGAAGAGCAGCTTCAGACCGCCATAGAGCAGCATGACAAGAACCTCACTCTGTCCTTGGAGAAGGAGGTTCAGGAGGTGAAGGCTGCTCTTCAAGCGATGCTGTCACAGCTGAAggacgaggaagaggaggacgaAGAGGCCCACGAGAAGTACTGTGATGTAGAGGACGAACAGGCCGAGGATGAAACGCTGGAAGAGGAGCTTTACTTCAGTGACAGCTGGGAAATCTGAGCGCATTTCTATTTCTATCGCGTCGAAGTCTGTTTTCATACCGTCATCAGGTCCTTGAAGAGAACAGCTCACCTCTCCCTCGCCCACATGTCGTTTCAGAACCACTGGACTGTACTTTTCTTACTTTTGAAGGTTGCacttccactgaaaaaaaaaataaaaaaataaaatctcaaacATTTCCATTTAAGATAAGATTTTCGTTTCATGCAAGCGAGGAAAAAGCCTTTGGAGCGACATGCGGacagaaataatttttatcTCTCGATTAGGACCTCTAACCACGCGCATCTCGTCAAGAGATAAAATATAGagataaaaatttttttattctaatcggttagtgtttattatttatttgcttgccaTATTTCCCAGCTGTTTATTCGCTTTGGCGTCACGTTGCTTCGTTATTTTAGCGTATTTAAACTGCatggcattttatttatttatttaagttgcTTTGATTATATcgatattattttagaaaaaaaaaacacacaaaaacagacttttttttaatatacagatGTGAAGACCAATAAACCCCTTAAGCCTAAATCTGAAGAAGTATTCAGCATTCAGACTCTGAGCTCAGGATCGAAACGTAGCCTTTTATCTCAACTCTTTTACGACTCGAACAAGAACATCGTGTTCAGGTTCACGACGAAACCGCTGTATTTGAGCCCTGCTGATGTTCTGTGAATTATAAGAGTCGTGTAGCATTAAGTGCCTTCTTTAAACATTGGTTGAAATGGTCTCCTTATTTGAAGCAGAAACAGGTGCTCTTTTTATAAGTCTTgatatgttttactttttaaggaAAGCACTTTTGTCTGTCACCTGTGGGTTTGTTTGTACTAATCGTGAATGTatatttgcatgatttttgtCCCGCAGAActttatgtattaaatgtattatacatttttattgtttttgaatacAGGTATCCCTGCCTAAA

Function

GO:

id name namespace
GO:0060351 cartilage development involved in endochondral bone morphogenesis biological_process
GO:0001755 neural crest cell migration biological_process
GO:0010470 regulation of gastrulation biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0021755 eurydendroid cell differentiation biological_process
GO:0021778 oligodendrocyte cell fate specification biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140781 lncRNA downstream 15996 19846301 ~ 19846534 (-) True G95190
XR_006252305.1 lncRNA downstream 26877 19818053 ~ 19835653 (-) True LOC122356282
TU140737 lncRNA downstream 192199 19669709 ~ 19670331 (-) True G95147
TU140683 lncRNA downstream 269154 19591872 ~ 19593376 (-) True G95110
TU140625 lncRNA downstream 434604 19425563 ~ 19427926 (-) True G95068
TU141149 lncRNA upstream 17520 19921002 ~ 19921640 (-) False LOC122357123
TU141188 lncRNA upstream 171889 20075371 ~ 20075937 (-) True G95469
XR_006252294.1 lncRNA upstream 204709 20108191 ~ 20140958 (-) True LOC122356209
TU141210 lncRNA upstream 211244 20114726 ~ 20140686 (-) False LOC122356209
TU141230 lncRNA upstream 333196 20236678 ~ 20238227 (-) True G95506
XM_043256075.1 mRNA downstream 173597 19685919 ~ 19688933 (-) True map10
XM_043256074.1 mRNA downstream 177197 19680245 ~ 19685333 (-) True ntpcr
XM_043254966.1 mRNA downstream 330527 19505862 ~ 19532003 (-) False fbxo11a
XM_043254965.1 mRNA downstream 330527 19505862 ~ 19532003 (-) True fbxo11a
XM_043254702.1 mRNA downstream 402133 19429836 ~ 19460397 (-) True kcnk12
XM_043256389.1 mRNA upstream 5713 19909195 ~ 19921669 (-) True LOC122357123
XM_043255840.1 mRNA upstream 93167 19996649 ~ 20025261 (-) True LOC122356781
XM_043255837.1 mRNA upstream 122187 20025669 ~ 20036473 (-) True LOC122356780
XM_043255838.1 mRNA upstream 123822 20027304 ~ 20036473 (-) False LOC122356780
XM_043255834.1 mRNA upstream 123822 20027304 ~ 20036473 (-) False LOC122356780
TU140311 other downstream 1189637 18545581 ~ 18672893 (-) True LOC122356088
TU140313 other downstream 1189637 18545581 ~ 18672893 (-) False LOC122356088
TU140314 other downstream 1189637 18545581 ~ 18672893 (-) False LOC122356088
unassigned_transcript_1930 other downstream 2142824 17719634 ~ 17719706 (-) True trnav-aac_26
unassigned_transcript_1929 other downstream 2143351 17719107 ~ 17719179 (-) True trnav-cac_10
XR_006252430.1 other upstream 240114 20143596 ~ 20143727 (-) True LOC122357145
TU141250 other upstream 576443 20479925 ~ 20486704 (-) True G95520
TU141252 other upstream 577961 20481443 ~ 20486704 (-) False G95520
TU141235 other upstream 585303 20488785 ~ 20492076 (-) True G95510
TU141237 other upstream 590160 20493642 ~ 20496864 (-) True G95511

Expression Profile