RNA id: XM_043255910.1


Basic Information

Item Value
RNA id XM_043255910.1
length 1945
RNA type mRNA
GC content 0.42
exon number 7
gene id LOC122356839
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 18975831 ~ 19008866 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGACACAGGAGcagttttactggtctccactggaggtctctgtGTATGCTGCAGATTTGTTGGACGATGCTTTGTGTCAGGGTCAGGACCTTCAGAGCAATCGCGCTCTGCAAGCTCTCGTCGCGGGACTCAAAGCCTACAGCACGTGGGAGAACGTCGCGTGTCTGCAAGACTGCCGAGAGTGTACTGGAGGcatgggCTTTATGATGGAAAACCGTATTCCATCTCTGAAGTGTGACTCCGACGTCTTTGTCACATTCGAGGGCGACAACATGGTCATGCTTCAGCTGCTGACCCAATACACCAAACTGATGGGGAACAACTTCCTGATGGGACTGATCAGAAACTGGACCAGCTCAGTGTCAGACAGCCTTAGAACCAGCTTTCTTGGCTTCAGCGCGGATAAAGTAGGAGACCTAATGTTCCTGCTGAAAGCGGTGAGCTACAGGGAAAGGTTATTACAGCGCAGCTTGGCAAGTCGGCTTTACAATAAGTTCTGCCTACTTCACGGCACTAGTCTGGTGTATCAGGAGAGAGCCTGGTATCTGGAGCACAACTACCTGACCCCCAACACCAGCCGACAGATCCGCAGCCAGCTTTTGGAGCTGTGCAGATCGGTGAAGGACGAGGCGCTGAAGGTGGTCGACGACTTCAACATCCCGCCCTGCTGCATCCAGGCTCCTATCGCCGGAGTCTCCAATCCCAGAGCCGAATGGGCCTTCTATCCGCAGCCACAGTATCCCGGCAGCACCCAGCCAAAGTCTAAGCTCTGAAAGAGAGAATGAACGGGGCTTTACGAGGTTGAGGAAGAGCGATGAAGGGATGTCAGGTTGCTGGATGTTCTTTCACTTCGGGAGGGATTAATGCACTTACGAACGCATATTGATGCTTTATGATTAAGCGTCACGCTTTGTGCCGAAAGAAATGGTGACTTGCTGCTAATGGCCAaggccttaaaaaaataaatacactatagGCATGACTTTTTCTTgttcactcttaaaaataaaggttccaatgGGAACACTGCCACAGAAGAATCATTTTGGGTTCCATAAAGACGTTTTCGATGAACGGTTCTATAAAAGAACTATTTGTTGGAGTAAAGAACATCTAAAAGAACCTTATTTAACATTCAAAGAATGGATGTCAAAAGATTCTTTATGGAACCACAGATGCcaataaaagaacatttcattgaacatttttaataaatcttctTCCTGAGTGTgaaaaacatctgaagaacctttcgtCCAATTGATAAGTTCAATGGATGTTAATGGATGTCTTCGGTGCCAAttaagaacctttattttaagagtgtgtgtgtgtgaagaaggGAACTTCAGTTATACAAGTTGAAGTTCGTGTCTGTGATACAGGTTAAAagtttttaagtgattttagcTGAGATGATTTCGAATAAAGCAGCCGTACCGGAATCAAAATTCTATAAACGCACCAAATATCTTGCACTTACAGAGGTAACAGCATAAAGGACAGGccatttttggtgaaataaatcaaatgagtCATCGTGGGACCCAGAtatctaatatttatgtaattgcaCATGCATTGTGTAACAGTAACCACAATAACATGTTGGAcggataatttttttatttctaatgccATTATCAACTgccatacatttacattttgagccaaataaagttaaaaatctGCTCTATGCCCATTTATGCTTTTGTCATACACTAAGTTTGAACCAAACTACCAACTACCCTATTTAAAGTTtcaattgtttcttttttttttactaatgtcTGCAAACTGAATTGCATAACACTGTGCAAATGAATTATTGCATCCCCTGATATTTCTGCACTTGTCCATGCAAACTAAGGGAATTATTTTCCTTATCGTCTTTGTGTTTAATgcttaatttaaacaatatcGTAATAAAATGTGCACCAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140438 lncRNA downstream 332 18957718 ~ 18975499 (-) False LOC122357020
TU140447 lncRNA downstream 59181 18916245 ~ 18916650 (-) True G94941
TU140317 lncRNA downstream 348519 18623483 ~ 18627312 (-) True G94849
XR_006252272.1 lncRNA downstream 414362 18545571 ~ 18561469 (-) False LOC122356088
TU140305 lncRNA downstream 431847 18543652 ~ 18543984 (-) True G94845
TU140483 lncRNA upstream 69694 19078560 ~ 19078839 (-) True G94961
TU140501 lncRNA upstream 161002 19169868 ~ 19170089 (-) True G94978
TU140529 lncRNA upstream 192977 19201843 ~ 19208269 (-) True G94997
TU140608 lncRNA upstream 277171 19286037 ~ 19287424 (-) False itga9
TU140625 lncRNA upstream 416697 19425563 ~ 19427926 (-) True G95068
XM_043256197.1 mRNA downstream 307 18957703 ~ 18975524 (-) True LOC122357020
XM_043254727.1 mRNA downstream 142883 18830268 ~ 18832948 (-) True LOC122356218
XM_043255935.1 mRNA downstream 166251 18780375 ~ 18809580 (-) True slc29a1a
XM_043255934.1 mRNA downstream 172286 18780375 ~ 18803545 (-) False slc29a1a
XM_043255933.1 mRNA downstream 178171 18780375 ~ 18797660 (-) False slc29a1a
XM_043256191.1 mRNA upstream 213190 19222056 ~ 19244847 (-) False LOC122357016
XM_043256190.1 mRNA upstream 213190 19222056 ~ 19244842 (-) True LOC122357016
XM_043256196.1 mRNA upstream 236738 19245604 ~ 19247578 (-) True zmp:0000001138
XM_043256180.1 mRNA upstream 249520 19258386 ~ 19266509 (-) False LOC122357009
XM_043256181.1 mRNA upstream 249520 19258386 ~ 19265986 (-) True LOC122357009
TU140311 other downstream 302938 18545581 ~ 18672893 (-) True LOC122356088
TU140313 other downstream 302938 18545581 ~ 18672893 (-) False LOC122356088
TU140314 other downstream 302938 18545581 ~ 18672893 (-) False LOC122356088
unassigned_transcript_1930 other downstream 1256125 17719634 ~ 17719706 (-) True trnav-aac_26
unassigned_transcript_1929 other downstream 1256652 17719107 ~ 17719179 (-) True trnav-cac_10
XR_006252356.1 other upstream 859147 19868013 ~ 19907062 (-) False disc1
XR_006252430.1 other upstream 1134730 20143596 ~ 20143727 (-) True LOC122357145
TU141250 other upstream 1471059 20479925 ~ 20486704 (-) True G95520
TU141252 other upstream 1472577 20481443 ~ 20486704 (-) False G95520
TU141235 other upstream 1479919 20488785 ~ 20492076 (-) True G95510

Expression Profile