RNA id: XM_043256180.1


Basic Information

Item Value
RNA id XM_043256180.1
length 5480
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC122357009
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 19258386 ~ 19266509 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAAGTGGTAAAAATTTAGGTCACAACTTTTATGTATCTAAAATTGTTTGCAACCAATTAccttaaatttgtttttttctttcagtgtaGAATGgttcaaaatacagaaaaaagtagaaaactgcATTGTATTTCAATGCACTGtagttatttgttttgcttttcattaTGAGTAAGACTTATTGCTATTTAGAATGACAGATGGACGTATATGTTTGCATAAAATTATCACAAGTTGTAGTAATGGGGATAAGCATCTTTTCAAGCCTTTATAAAAAAGAGgaaatacagaaatgaaaatgttttgaatcaaTTGATTGTTTTTAAGTGTACTTCTATTGTTAAAAATTGCACTTAGTAATTCCGTTGGGATAAATGACTTTGGTTACTATGGGACATCTGAGAGCCAAACAAACAGTGCTGCATTATTCATTAGCTGCTACGGTCTGACAGAAGGAGCACCTGCATGGAGCTGCTACACCACCAGTGCGAGAAAAATGGCATCTGTACTGGAGGATGGCTTGATAAAAACGGGCTCAATAGAGCAGGTGGTGGCCCCTCTGTCCACTCACCTGTGTCATCTCATCCTGCTCTGTGGGAGCGAGACAGAACTGGATGAATTCACCCGGCTGGAAGCTGCAGCTAAAGCCGTGGCCAAAGCGTCCAAACACATGGCAGAAGTAGCAACAAGGTTAGTCGAAGACACTGATGATGAGGTCTTGAAGATGGAAATGGATCCACTTGTTGAATCCCTGACTGTTTCTGGTCAGCATGTGCTCCTTGCCACCCAGAAGCTCAGCATACAACCAGAGATCATAGAGCACAGAGAAGAACTCATTGAAGCCACTCAAAATGTGCTTGTAGGTGTGGTCAAGATCCTGCTAGTGGAAGATGACGCGACTGTAAGGAAGATCACTGCAGCTGCTGATTGGCTATTGCGGTGCCTTTCACAAGTAGGAGCTGCAGCAGACATCTCATCGTTATTGAAAGTGTTTAAAGCATACTCAAAGGCAATGCTGCTTCTTCACAACTTGGTGGTGGAAAGAATTCAGGAACTGCGTGATGACAAACAACAGCAGCGTTTGAGGGCTTCTCtagaaacactaaaaaaatGCGTCTCCATGCTGCACACTGCCATGTACACGACCATCAAACATCCACACAGCGAGGAGGCACAGAGTGCAAAGCAGTACATCTTAAACCAGGTGGACTTAACTGTAAATGACATCATAGCCACACTCAAGAGCAACTGTGGCCCAGCTGCCAGGGGTTCATGTGGATGCTACACCGTAATACGAAACAAATTACTAAGACTGCTTTCTGACCCTGCTTGTGTTAAAGATGGTGGTTTTGATGTTATACTTCGCGACCTAGTGTTCCACAGCATGGCAGTAGCAAACACTTCTCGTAGGGATATTCAGTTTGAGGTTGCTGCACACTCTAAGCAACTCCTTCAGCTCTGGTCAGAGATGTCACAACAAATGAAATGTTGTGATGATCAGCAGCTTGTAAACACATGTGCTTCTCTTTTGAATCAAATCCACAAACTTGACGATGCTATGGTGAAGGCCACACAGTTGCGAGTAATGGACATATTTGTCACAGCTTCAAGTCCTTTGGAACAGTTAGTGCACACCATAAGCTTTATCGCCCAGGATGAGCAAGATGAAGATAAATTGCATGTGGAAACACTTCAGGTTGAATCTGAATCCTTCATAGCTCATGCTGACAAGATTTCAGAAGTGGCTGGCTTTATCTCAGCTTTAGCGTGTGATGAAAAGAGTCTTGAGGGCGTAGAGAACTCAAGAGGATGCATCATGAGACTGAAACAAGCAATTTGCGTACTTGTGCAAAATCTAGAGGAAGACGATGTGCATTCAAGCGAAACTTTGGAAAAATTAAAAGAGATGCAACAGAGATGGTCAGAGGAGATTGAGCAGCTCTTGCATGCATGTAGTAGCATCATAAACGTGAAGGACTTTGTCTGTCTTGCTCTTCAGGAGATGCAGAGCAACTGGATGGAGTTTGTCGAAGcacatgaagatgaagatgcACAGTATCTCACGAAACAAGCAAGCTTGCTTATTGGCCATATGAGCTTGGTAATACAGCTTGTGAGAAAACATGTCAGTAAGAGTGACAATCCTATCTACCGTAATGGACTTCTGGTTCTGATAAAGCAAGCAGAAGGATATGCTGCCGAGGTGACAAGTTGTGTCACTGATATCTACTCTAACACCAGTCTTAGCAATGAGGCTTTCTCATTGCTCTCTGATTGTGTTTCAAAAGCcctaaaacattttgacatcCTGCGTGAAGGACTTGACGGTTTGCAGCATCCACATCTGCTTAGTCCTCTGCGGGAGGGGGCCCGCCAGTCTGCTGGTACCATACCATGTGCTATGCCCATTTCAGAGCATGAAAGATCAACTGAAGACCATTCTGACAAAACAGAAGCTGAGACTTCAGTGCAAAGTCCTAGTAGTGAAGAGATTCCATGTCAGCTCAAATCTGGTTTGGGGAATCCAGCTGTTCAACTAATACTGGAGCATGATGTACCAAACCCTGAAGAAGCATGGATAGCGCCTGTCACAAAATCTAAATCTGTTATACAGCTCCATAATATTGAGTTGCTGCCTCTCTTGTGTGAAGTTGTCTGCATGACCAAAGGTAAAGATGTGGAGGCTCTCAACATGGCTTGCACTGGAGTTCTAGGACTCTCAAATAGCTATGCCCAAGCTACAAGAGAAGCCACCAGTGTCATAGACACAGCTGATAgcgaggaagtggaaagtctgCGTTCCAAACTTGTGTCTTTGACACCATTGCTTGTCCAGACAGCACAGGAAACAGCCATGAGTTCTGCCATGAGTACAGATGGCATTTATAAACACAGTACAGACTTCTCTGACCTTATCAAAAATGCACGTAAGATATTGCTGCCAGTGGCAGGGATGTGGTACCATGGTGTTTACTCCATGTTCCAAAACTATGCACCCAATATGTTGGAGTCCATCACACAGGAACTCACAGAGGTCATGTGTTTATGTGCAGACGCTGTGCAACTTGTAACATCAGCGGATATAAAGGTGATGGGCGAGTGTCATGAGAGTATAATGTCTTTGCAGAGCAAGCTCCAAAAAGCTCAAACCAACACCAAGAATCTCACAGACGTAGTGGGTTCGAGACCAACTCAAACTGATGAACTTGATGGTCTCTGCATGCTTTGGGCCTTGTCTGTCCAAGTACTGTTAAACTCATTAGATAAGGTTGTGGGAACAGTTACGACTGATGGTAATAGGCACATAATCACACATCAAATGTCACCCAAGAAGTGGTTGTCAGTGATGTCTGAGAACTCACTTCGCATACAAGAAGCTGCAAAACTGTCTTCTTTGAACTGTCGAGATAGCTACAGAGTTAAACTGCTAGGAGAACTACAAGAAGACGTAAAGACACTTACGGATTCTTACCTGCAGGCTGCTGAAGAAGTTGGTACAGTGTCCCTCTCAAGTGTCCTGATGCTGGCGAAATCAGAGTTACTTCAGAGACAGCTTCAGATCAAAATAAAGGCACTCTCTTGTCTCCTGAGTAAAGTTAACCATAATTATGTGACAGCCATTCAAGATACTATTGCTTTGGCATGCTCTGTCCAGATAAAACATAGTGGCATGGAAACTGAAGACAATCTGGCACAGTTTGAAAGGGCTACAGAATTGCTTGTGCAGAATGTTAAAAGGGCCACAGAGTCCATTCAGgactgttttaatttcattagaGACCCAAAGGAAAGGTCCAATCTGAGATTCATTAATGACCacttaacatttcaaatgtctGACATTGTGAGTAGAGCCAGACTAATTGCAGAAACGCAAACTCTTGGAGATACTCTCACCCTTGATATTCAGTCACAGTGCTGGTCAGCAAAGGCACATTACCTTGTTGAAGAAATTTGCAAAGTAGATGGAATTCTTGCGGTCACGAAAGAAGAGATCAAGTGTAGTTTGCAGTGCAAAGAGTCTTTTGGAGTCTTCCTGACACCAAGTTTCACAAAAAAGGCAACACCACATCCTCTATCCACAAATAATCAAAGCCCTACTAAAAGCAAACCAAGTACCAGTATCCAAGGTGTGTCCAATCAGGAACCAAATAAGGAGGAGACATCCCAGAAGAGCCCAAGAGGTCCTGTGTTCAACTTAGTAGATACGACCCTCTCTTACACTTCTCTCTTTCTGAAACGAGAGACTGAGAAGTGGGATGACCAGGGTAACCAGATCGTCAGGGTGACAAAAGAAATGGCTGATAAACTCTATCACATGGCCCAGTACCTAAAGAAGAAAGGTCCAATCCAGACCAAAGATGCTTTTGTAACATCTGCAAAAGACCTCGTCTCAGGTGGCCAATCAATCACCCAGTTTGTGCGTGTTATAGCAGACCACTGTCTGGACAAGCATTGCACTGAGGAGCTCTTTGTCATTGCAGAGCAGATTCTGACCATTTCCAACCAACTTACCATAATTTCAAGGGGTGCATGGTGTCTCTCCAGTGTTAATGCAGTTACTCCTGGGTGCAAATCATCAGACGAGATCCTGGTGAAGAATGCACAGAATCTACTTCAGACAGTTATCCAAGGAGTACGAGCAGCGGAGACTGCCTGCATCAGGGGTTTAAAACAGCCTGAGCCAAACTCAGAAGCAGCAAAGGCAGCAGCTTTCTGTTTCCAGTGGAAAAAGAGTCTCCTTATGCACCGAGCACAAGAACAGCTTAACCCAGAAACTGATGATTTGGGTCTACGTAGGACCTACCCACATTCAACAGCACCCAGCCTTGCACCACCCATCAACGTGTTAGATAATTACAAgtgaataaacacaaaataaagagtCTTAATTTTAACTTCTGGATATTCTGTATGTTGAGTCAACAGCAATGCCAAACACTGTGATATATCCCATAGATTCCTAACTTTTCTGCCTCACAAACCAATctaaaaatgcacaacaaacTAAATGTGCTTAACagggaaaaaaagggaaaaaaaccaaCTTATTTTGAGTCCACTGAATAATCATATGTAATGCATATATTTCAGCATGTAAGagatgcaaatgcattttagaagcataattgtaaaatataaatgaaatcaaGTCTGAAATTGTATTTGGACAGTGATGAAATAATTTGACTAAATTGTTTTGATGTTATCCTCTAAGTTCACTGTACAGTAAAATGCATTAGCCTGAAGGTCGCTCAGCTGGCTGCTATTCAAGACACAAAAGTGAcatccatttaaaaacactaatatccAAATCACTTAAtcctttgtattttattttaaacatcgaatttaaaaaaagaggaaagtgACTGCTGTATTTAAATTCCCTTACTAGCATTTCAGTCAGACTGGTaaaagaacacaaaagcagTTCAGCAATATCAGTggaaaaacatatacaaataaaatagaacTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140529 lncRNA downstream 50117 19201843 ~ 19208269 (-) True G94997
TU140501 lncRNA downstream 88297 19169868 ~ 19170089 (-) True G94978
TU140483 lncRNA downstream 179547 19078560 ~ 19078839 (-) True G94961
TU140438 lncRNA downstream 282887 18957718 ~ 18975499 (-) False LOC122357020
TU140447 lncRNA downstream 341736 18916245 ~ 18916650 (-) True G94941
TU140608 lncRNA upstream 19528 19286037 ~ 19287424 (-) False itga9
TU140625 lncRNA upstream 159054 19425563 ~ 19427926 (-) True G95068
TU140683 lncRNA upstream 325363 19591872 ~ 19593376 (-) True G95110
TU140737 lncRNA upstream 403200 19669709 ~ 19670331 (-) True G95147
XR_006252305.1 lncRNA upstream 551544 19818053 ~ 19835653 (-) True LOC122356282
XM_043256196.1 mRNA downstream 10808 19245604 ~ 19247578 (-) True zmp:0000001138
XM_043256191.1 mRNA downstream 13539 19222056 ~ 19244847 (-) False LOC122357016
XM_043256190.1 mRNA downstream 13544 19222056 ~ 19244842 (-) True LOC122357016
XM_043255910.1 mRNA downstream 249520 18975831 ~ 19008866 (-) True LOC122356839
XM_043256197.1 mRNA downstream 282862 18957703 ~ 18975524 (-) True LOC122357020
XM_043255441.1 mRNA upstream 19521 19286030 ~ 19362041 (-) True itga9
XM_043254861.1 mRNA upstream 97063 19363572 ~ 19399890 (-) False golga4
XM_043254859.1 mRNA upstream 97063 19363572 ~ 19399890 (-) False golga4
XM_043254857.1 mRNA upstream 97063 19363572 ~ 19399890 (-) False golga4
XM_043254860.1 mRNA upstream 97063 19363572 ~ 19399890 (-) False golga4
TU140311 other downstream 585493 18545581 ~ 18672893 (-) True LOC122356088
TU140313 other downstream 585493 18545581 ~ 18672893 (-) False LOC122356088
TU140314 other downstream 585493 18545581 ~ 18672893 (-) False LOC122356088
unassigned_transcript_1930 other downstream 1538680 17719634 ~ 17719706 (-) True trnav-aac_26
unassigned_transcript_1929 other downstream 1539207 17719107 ~ 17719179 (-) True trnav-cac_10
XR_006252356.1 other upstream 601504 19868013 ~ 19907062 (-) False disc1
XR_006252430.1 other upstream 877087 20143596 ~ 20143727 (-) True LOC122357145
TU141250 other upstream 1213416 20479925 ~ 20486704 (-) True G95520
TU141252 other upstream 1214934 20481443 ~ 20486704 (-) False G95520
TU141235 other upstream 1222276 20488785 ~ 20492076 (-) True G95510

Expression Profile