RNA id: XM_043258804.1


Basic Information

Item Value
RNA id XM_043258804.1
length 6213
RNA type mRNA
GC content 0.39
exon number 15
gene id msi2b
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 16551191 ~ 16762064 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGCCCCGTGTGGGTGACGGGAGGGGGAGGGAGCCAGGCAGAGCTGATCCCACGTGTGACGCTCGCATTCCCGGCTCAGTAATATTCTCTTAGctctgacagtgtgtgtgttagttacTGGCCACAGTTGGGTTAGCCATGGAGGGAGACGGGAGCCAAGCCACATCTGGAAGCCCTAACGATTCGCAACACGACCCGGGtaaaatgtttatcGGTGGCCTCAGCTGGCAAACTTCACCAGacaGCCTTAGAGACTATTTTAGTAAATTTGGAGAAATCAGAGAATGTATGGTGATGAGAGATCCCACGACAAAACGctccagggGATTTGGCTTCGTTACGTTTGCGGATGCGGCCAGTGTAGATAAGGTCCTAGCTCAACCTCACCACGAATTAGACTCAAAGACGATTGATCCTAAAGTTGCCTTTCCAAGACGCGCTCAACCCAAGATGGTCAcaagaacaaagaaaatatttgtagGCGGATTATCAGCTAACACAGTAGTTGAAGATGTGAAGCAGTATTTTGAACAGTTTGGCAAGGTAGAAGATGCTATGCTTATGTTTGATAAAACTACAAATAGACATAGAGGATTCGGCTTTGTAACTTTCGAGAACGAGGATGTGGTGGAGAAGGTCTGCGAGATTCATTTTCAcgaaatcaataataaaatgGTAGAATGTAAGAAGGCCCAGCCGAAGGAAGTGATGTTTCCTCCAGGGACGCGGGGGAGAGCCAGAGGTCTCCCCTACACCATGGACGCCTTTATGCTGGGAATGGGCATGCTGAGTTATCCAAACATTGTAGCAACGTATGGCCGAGGATACACTGGTTTCGCCCCAAGCTACAGCTACCAATTCCCTGGCTTCCCGGCTACAGCGTACGGTCCAGTAGCGGCGGCAGCAGCAGTGGCGGCAGCGCGTGGCTCAGGCTTCCCCGATTACGGTTTCTATTCCTCGCCAAGCGACCAACGGGGGCCCCCCTTCTCCTTTGCGGACTATGGCTCCCTGGGCCCCCAGGCGGCTCAGCTGCTGCAAAGCGAGCATGCCACATCAGCCTGCAACTCCCCTCTCCAGCACCTGGCCAGCCCGGATCAGTATAAGAGCCCAGGCACCAACCCACCCCGGCCTGGAGCCTTTCCTGGAGCCAGCAGTCCCGGGCCAGTGGCTGACCTGTACGGCCCCACCAGCCAGGACTCCGGAGTGGGCAACTACATTAGCGCTGCTAGTCCCCAGCCCGGCACCGGCTTCGGACACGGCATTGCTGGTCCTTTGATTGCGACAGCTTTTACAAATGGATACCATTGAAACCTAACAGGTGGTTGGTTGCCATCTCATTTGAGAGTTTATCAGGAGGCCCGGGGAAGACTGGCCGGAGTTTCTAATTGGTTCTGTGTACAGGTAAAGGCCATTAAACTTCAAGCACTACAGCGCTGAACGGGAATCTAAAGCTGAGATGGCGCCACACGAAGAACAACCCGAAACGTCAGAATCATctcagaaagaagaaaaaaaaacaacaactaaacaATCTGCTGTACTATACTGAAAACCtggcttttaaatattttatcctAGAGTAGCCCTGACCTTAAATTTaggattttatttgatttttttcctttactgtttttccttttagaaGCATTTTAGTCACCTTTTATTGTGTACACGTTGAATCAACCAACGTTTGTTTGAGTTTCTAGATGTTCTTCATTGTTCTTGAATGTTCTCTGATGAGAGCGACTATGTAAACatgaaatgtctttgttttttggtttttgaggTAGTGATATTCCAATAGCAGTTCTGTTTCACAGCCCTCGTCTATCACGTTTCATACAAGCAAGAAAACGGATTGAAATGACTCCGCTTGAAAAAggtgacatttttaattcaagccTAAACCGCAATGAGTGGGTAACTCAAAAAAATCTTAGTAGCTCTGTTCTATGTTTATTGTGATGTCTTGTTAACCATGATTACCTATTTTGGGCAATAAGAGGACTACAATATTTTCACAGtccttttttataaatgtcatttttgttgtcgatgaaacgaaacaaaacaaaaaaaaaaaacgaaaagaaaaagctttccttTTAATACTTTGtgaaatgagatttaaaaagaaaagaattctgaaactgtatatattattcTGTTCACTGCATCAAACTGTTTCTGAGAGAGAACCATATTTTTGTGATGGTGTCATAGAGGTTGTTATCGTGCGCAAGCCGAAATATGTCAGTGCAAAAATATCTTCGAGGCTCAATGCAGTAACCGAGGTCCATCTGTAGCACAAAGGCCGTGATTTACCCCAGTACGGACGAAACTCAATCGAACACTGTTAGCTCGCTTTGTAAATACCGTCGGCTTTACAACTGTGCAGGTGTCATACCAGCATACGGATTAGATAGTAACGTCAAGATGTGCACCGCTTACGAAGAGAAGATATACACAAATCAGCATTgtaacaaaaggaaaaaaaataagaagaataatAAATCACGACAAAATCCAAAGCAcacataaaaatcattttaaaccgTGTCGAGACATTTCATGTTAGCCTTTCCTTTTGACGTTCTGGTGCGAGCTTCTTTTTCCCGCCGAGTGTCGAGGTTTTTACGCCGAACGATTCGAATAACAAAggcaatatttcaaaatgttttgaaattgcTCTAcgattaggaaaaaaaaaaaataaccaatcTTTTATACCATTACCTCAGTCCTGTGAGAATTACTTTAAAGGagattacaaattaatttattttagcctGAGACAGATATTGAAAAAGATATTAAAGTGTTGTTTTGAAATTAAGTAAATCATTGCACTGTGAGAGAGAATTTATCATTTTCTATTTGCACATGTGAACTGACAGTCTCTAAACGTGGGTCATGTGAAGGACCGCTGTGGAAgtcggtttgtttgtttttttccacgcGGGATAACACTTACGAATCTCGAGTCTTGGCTTGCATCGATTCGAAGACTGTACTTTTAAATAATCTCTTTCCAGGGATTTTATTCTAGAATATCAGAGATGACAGATGGGTTTATTGGTAGCAATAGTTCATTTCCTCAGAAACACTGAAACTGATTGAAACCAGTAGCTGCTACACACATTTGTTGTACATGTGGGGACTGGATTTGATGAGACACAAATGGCATTTAGAAATATGAATGATATTTACAATATGAATTGACTGATGTATGCTGTTATTCGATcttgttgaaaatgttttatttttcgtttcgtatttaattttttgttgttattttttttcctgttcattTCACTAAACTAACAGGTGAGGCAGAATGCTGGATTCTTTCTCAAGAAGGAGACGTGATAAAAGTaatacgattaaaaaaaaaaaaaaaaaaaaaaaaaaaaggcgagACGAGAAGAACTTTGTGCTAACTGTTtgagctgtttaaaaaaagacaaacgtacaaaaaaagtaagaaaattaTCCCGAacatgttttgaatttaaataggGATggatttttatcaatatttttgtggatgtTAATGATTATACTAAATATAACTGACAATAATACAGATattatgtactgtatttatcaATTGTTTCTCTTCATTCCCTGTCACCTCATTCAGTAATCTTATGTTGATCATTGTATTttagtagtgtgtgtgtttcaaaacaagaaaaaaaaaaaaaaaaaaaaaagagaaaacagaaaaagaaaaaacacaggaATATGACTTTACCTTGTAAAAGAGTGCTGTCTTGATGCCAGTGTAGTGGTCTATACACTTCTTGGTTggtatttttcacatttcccCCCTCATTCTCCTTTTGTCGTTTTGCCCTTTCTCTatatctcactctctctttagTGAGTAGTCGTAGGTGTTATGTACTTAATGTTAAGATGTAGAGGTATTCATTAGCAATCGTAGGACCAGTAAGGATAGAACTTTCtctttataatcatttaaagacaaaatgacaaaaaatgctGAGCGTTATTTTCAtagtaatttcttttcttttcttttcttcttcttttttctcctttttgttcTACTGTTTTGCTGGTCTCACATGGTTTCAACTAACCAAAGCTCTCACTGACGAAATCTAGGAGAAAGAAATTGCTGTACGACAGAATTGTAATCAAGGCATTAATTGGATCCCCACCcttgaatgttttaaaagggGTGTGCCATACTACCTTAAATGCTAACGCTAGATATGCAAAACCGTTTTACTTTCGTTCTTTTTTTAAGAGGCACTCAAGCTATAATTACCAAGAGGGTGATTTTATTACATGgaaaaattcataaatatttttttagtaagttttaaaagtaataatggcAATATAGCCTAATCATTATAGATATGGATAAAACTGTCATAGGTTTTTGATATTTATACTATTCAAAAATATCCCAGTGGCCTAAGGagctacctttttttttttatgcctagATTAATACATACATAGTCACCTGGGACATATAATATgattgtttttgtactttttaattgcattgcCAGCTTTCCATTTTAATTCAGCATCTACGTTCGATACCAGACAGCATGTCACACCAATTAGCTTGACTTTAGTGTAAATCCAGTCTCGCTCTGGATCTGTATTCCTGAATCACATCTGTTCTCAGGGATATCAAACATGAGCCACCTTCGCAAGGGAGATTTTTATTCTACTAGTGAGTTACGATCAGCACAACTTTGAATGAAAGGTGTCTTAACTCAAGTTTATTCAGTACATTTGAGCTAAATTTAAAGGTGCTGTCAGGGTGGACCGTGCGCAGTGTTTTCATCTTATTAAACACTAGACAGTTCGTTGTTCTTAGTTGGACGTCTCTATCTCAACGAGTTGAGCACCCAGCATCCATTTAGGACTTTAGATTAAGGCAAATGTTTAACAGCAGATGAAGCACATTTCCCTTCTGCTGTGAATCTCGATTAAAATGAAGGCTGGCAACCCTTTTAAACGGTCTTTTCCCCCCATTCGTATCCGTTAGCTTACCCCGGTTTTTCCGTAATTTGATCTTGTAGCTTGGACTTTAAGGTAGCATGGCTCTGTTGCcatcattttgttttccatgGACAGCAGTTTACAGCGGATGAATGTTACACATCTTGCTAGACTAGTTAAATCATTGGAAAAttgttggtttaaaaaaaaaaaaaaaaaaaaatgaaaaaaaaatgaaaatgaaaaaaagaaaatgacctGGAAGGTGTTGAGTGATTTTGGGAGTGAACTACCGTATCCATTTAAACTTGAATTTTGCGGCAAGTGCTAGGCAATGGCCAAAACGATCATCCCACTAATAAAGCAGCAAAACATTCTACACCGTAATGTCTAATGTACAGTATACTTGTATACATATAcaagatatatatgtatagtgtATATATCTCTCTTTGTTAAATTGTTGAAACTGCCTCATGACTCATCATCGTAGGTGAACCGATGCTAGTCCACACTGTTCGTTTCATTGGTTGTCGAATCGCGTGTCGTGTACCTGGAGGCCCGCTAGTAGTTTAGCTGCAGAACGTGTCGCGTAAACCTGACGAGGACGTGTAGCTCAATGGGGGACGGTACGGTCAATATGGTGTCTATAGGTGCAGGGTCTTATTTTTGACACTCGGTCTCCCATTTTCTCCTGAGGCCTCGCTAGGCCTCGCTGATTGCCTTGCCCATTCCTAACACTTGcccattttttaatgttaacgGACTTTTTACCGCGAGAACTGACTGAACGGACTGACGTCTGAAAGCATCTTTCAGGTCTTCTTGTATGGCTTGCTCAAGCCCTGttgtaaaataaactaaagtgGATGGGGGTCTCTCACATCTCAGATGTGGaaagtataattttatatttgtattttcaaataataatgataataataataaaaaatgtttgtgaaagGTTTCCATCCTCTACTGTGGTCCAGAAATCAATGTGTTTGTctggaaaagattaaaaaaaataataaaaagaaaaaaaaaaaaaaaaaaaatacaaataaaagagtTTTGAACCATTTCACTcatggtttttattttcaacttttttcaaGCAATTGATTTgtgattcaaaataaatgaatataccTGCAAAAGATTGTATGCCAGAACATGCACAACgattaaaatgcacaaagttGAATACAGAGCCCAACA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158540 lncRNA downstream 126956 16414285 ~ 16424326 (-) False LOC122359003
TU158538 lncRNA downstream 138016 16413046 ~ 16413266 (-) False LOC122359003
TU158375 lncRNA downstream 267106 16164441 ~ 16284176 (-) True G107217
XR_006252598.1 lncRNA downstream 402544 16141997 ~ 16148738 (-) True LOC122358383
TU158361 lncRNA downstream 430730 16115547 ~ 16120552 (-) True G107208
TU158598 lncRNA upstream 73273 16835334 ~ 16841735 (-) False nf1a
TU158669 lncRNA upstream 313569 17075630 ~ 17075857 (-) True G107429
TU158671 lncRNA upstream 321660 17083721 ~ 17084238 (-) True G107431
TU158676 lncRNA upstream 324598 17086659 ~ 17093363 (-) False LOC122359261
TU158679 lncRNA upstream 343053 17105114 ~ 17105384 (-) True G107435
XM_043259062.1 mRNA downstream 124868 16412636 ~ 16426414 (-) False LOC122359003
XM_043259060.1 mRNA downstream 124868 16412636 ~ 16426414 (-) False LOC122359003
XM_043259061.1 mRNA downstream 124868 16412636 ~ 16426414 (-) True LOC122359003
XM_043258520.1 mRNA downstream 214530 16316642 ~ 16336752 (-) True LOC122358647
XM_043258373.1 mRNA downstream 487542 16062517 ~ 16063740 (-) False ly6d
XM_043259072.1 mRNA upstream 8441 16770502 ~ 16783868 (-) False akap1b
XM_043259074.1 mRNA upstream 8441 16770502 ~ 16783858 (-) True akap1b
XM_043259073.1 mRNA upstream 8441 16770502 ~ 16782930 (-) False akap1b
XM_043259070.1 mRNA upstream 22964 16785025 ~ 16841738 (-) False nf1a
XM_043259069.1 mRNA upstream 22964 16785025 ~ 16841738 (-) True nf1a
XR_006252671.1 other downstream 124893 16415107 ~ 16426389 (-) False LOC122359003
XR_006252641.1 other downstream 640808 15907362 ~ 15910474 (-) False xaf1
TU158145 other downstream 769271 15776508 ~ 15782011 (-) True G107064
TU157568 other downstream 2228885 14298344 ~ 14322397 (-) False LOC122359058
TU157450 other downstream 2625575 13920069 ~ 13925707 (-) False cluha
XR_006252673.1 other upstream 25534 16787595 ~ 16834736 (-) False nf1a
XR_006252674.1 other upstream 25557 16787618 ~ 16834736 (-) False nf1a
TU158667 other upstream 301388 17063449 ~ 17075378 (-) False LOC122358654
TU158695 other upstream 435228 17197289 ~ 17198322 (-) True G107442
TU158691 other upstream 436775 17198836 ~ 17199328 (-) False G107442

Expression Profile