RNA id: XM_043258363.1


Basic Information

Item Value
RNA id XM_043258363.1
length 4360
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC122358522
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 1801988 ~ 1807484 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAGTGATCCGCTCCTACTACGGAATGGCTGCAAACGCTGCCCGCTCATAACTGCTCCCCATGGGTCATAAGGCGGGCTTCCGCGAGGGGGCGGTTGGCGGCTCCATGAGCACGAACCTCCATTGAGcatttttaatggaCTGCGGTTAACTAAAGGCACAGCTAAAGGGTCAAATATGGAATCTGTCCATCAGTCTTTTTTCCTGGACGGGATCAGCTGACACATCAGGAAGACATCAGCCGAAACTGATCTGGTCAAAGAAGATGCTTCATCAAATATTCAGCTCTCAGACACCCTGcactttgctttctttttggcCAGACAGGATGATAATGTTCAGGAATTCAGGCAGGTTATGAGAGTCAAGATGTTCTGCGCTCTTTGTATTTGAGATTTCACTTACTGTATGCGTCATTTAACCACAAGAGCCATAATGCGTATCAGTTTTTGCCAGGCTCTGTTAACAGGAGCCATCGTTTTGAATTTGCTCATTCTATACTACGTCTCACGGGCCCAGCAGCAGATGATGGAGAAGCGTCGGGAACAAAATAAAGGCTTAAAGAAAGCCTCTCTGCCTGTGGCAGGACTGGGAGCTATGGGTAATCTTGTAGGTGGAGGTATTGTTGGAGGTGCCAAAATGGGAGGCCTCGAGGGCAACATGCGTGGACCACGCGTCACGATCCTCGTTCGTGAGTTTGAAGACTTTGAAAACTACGTTGGCGATGTCGCACGCTCCTTTTTGCGGCAAAGACCAGAGTTGCCCTTCCTCGCTGTAGCCGAAAGTCTGCCGTACCCTCCTCTGGTGCTCCCAGAAGGAGCCCGGCTACTCGTTTTGTCTCCAAGCCCGGACCAGCCTCCACAAACTCACCGCCCCGAGTTCAATGTTCAGACGGAGTTTGCTTTGTTAGTTCCAGATGGCGTCGAGCTGGACCACGGCCGACAAATTGAGCGTCTCATTCGGGAGCTGGAAGGGGAAGGTGGCGGGCCGGTCAGACTCGTTGCCGCTCCTGTGCTGACCCGCTCTGCGGTCCAGTGCCTGCACCTTCGGGTGAATCTGCGGGAATGGACCGCGACCTACACCCCTGCGGCCTCAGGGAGCAGCGGCAGCGTCTGCACGGCTCTGCAGGGAGACGCCGTGGTCCTTATGCGCTCCGAGGACCTCTTCAATCTCTCGGTGCCCTTAGGGCGCCCCCTCATGTCTTCCTTGTTTGTCCAAACTTCCCTGCGCGGCTGGAAGGTCAAGCTCCTGGAGGGACCTTCGTTTTCTGCAAGTCATCGCCCGCTGTTTAGCTCGGCGCACAGCCAGTGGAAGGCAGACAGTCGCCTTAAAGATGCCACCAATCATCTCATGCGTAGCTTCGGGCTGAAGCGCGTGGTGCTTCCAGACGGTCGGGATCAGTGGTTTGGCTGCAGTAAAGAGACCGCGCGGTGTTTCGGCACGGTGCGGGACGATACACCGGAATACCTCTACCTAGAGCGCTGGACTCCTCCTTGCTGTTTGCGGGCCCTACGAGAGACCACCAAGTATGTTATCAATATCTTGGAAAGCTCCGGTGTACGTTACTGGCTGGAAGGGGGTTCCTTGTTGGGAGCAGCCAGACACCAGGATATAATCCCTTGGGACTACGACGTGGATTTAGGCATCTACTTGGAGGACATTCCGAATTGCGACTACCTAAAGAACTTGGACTCCGGCTCACTGGTGGACGCTAACGGCTACGTGTGGGAGCGAGCGGTCGAGGGTGACTTCTATCGCGTGCAGTATAGCGAAGTCAACCATTTGCATGTGGATTTGTGGCCCTTTTACCCTCGCAATGGAGTTATGACCAGGGACACTTGGACTGAGCACAAACAGGACGTGGAGTTCCCAGAACATTTCCTGCAACCCTTGGTGCCAATGCAGTTCGCCAGCATCACCGCTTACGGTCCGAACAACCACCGTGCCTTCTTGGAACTCAAGTTTGGGGAAGGGGTCATTGAGAACCCCCAGTATCCGAACCCTGCCAAGAAAAGACTGGACAGGAGTCGCACGTTAGGCTCGTAGCAAGCAGTAACTCGATGTGCCACAATTACGCAACACTGCATCtgtgacattttaaactttGTAGAGTGTTACTGTCAGACCGAAGCTTTCGAACCGCGTCTGATCCCTTGAATGTTCACACGTCTTgctggttttatttattgtatgtgcGTTGTGGTTTGGGCAGACGTGAGTCCCAAAGGTAgtctaaatatactgtatgtaacaATGGTAATAAAAGTTCTGAAACCTAAGgatgtaatatttcacactgCAGCTTCCCGAGGAACTAAGGTCAAATCTTTGCTGTAATTTTCACGAACATTAATATATCGGACTCTGTAGCTATTAAAGGTAACAATTTATtgtaaggtgtccttgttacatattaaatgtgcttactataacaatataataatgcattattcataattacatgcaagtaactttAAGGCTAACCGTAATCCCAAACCTAAACCATATAGTAACTGGTACTTAATATTAATCActtagtacttaaatgtataattacactgtaacacgGATACCTTATAATAAAGTGCAATCCaattaaacactaaacaaaCGTTCGATTTTTAAACTGATTGACAGAGAAACaccagttttaaaaaaatatatattgcctTTGTGAATTTGCAGTAAGCGCTGGCATATGGAAGTCTGATTCATGTTTGTAGGTCCACAAGTGAAGTATTTAATGAACAACCCAGGCAGCTCATTAAATCCTTGAAAGGATTTCATTGCTTTTCAACTTAATGGTCATTACTACAGCACCATGAACTTTGTAGAGTGTAGGATGTTTTTATTGACATATGGTGACACTGGTGTATGCTCATGTTGAAAGAGGCCGTAATGACCTTTTAACAATTTCtttcctgaaatgtttttttttctgtgcaaatgGAAAAGGTTACATAAAAAGCCAGCGAAAAGAAGGTACTGTTTTAAGCACATAttcactttattaatattttcaccCACTTTGTTGCATGATAATAACtgtatttgattttcttttcttttttgactgACTGACCGACTGTTTGACCTCAATTTTGTTTCTATGtaacttaactttttttcctttttttgtctcGGTGGTTATCAAATATGCTATGTAATGATGTATGCACCACGACCCccaaatatttaacaaacagcgtaacaaaaaacaaactgtcTTAACAAGTCAGTGTATTTCAGATGTCGGGAAATAAACCACCACACAGAATTGCTTGTTTGCTTCGGTTTTTAGTGCAAATATCACAGTGAAGTGTTAAATAACCCACAAGATGGCGCAATAGGACATAAAGTCTTTAAACATGTTGCACTTCGTTACTGCTATGTATAATTACTGCGCAAAACTTCCCTAAAATGGTGCATTTTAAGTCTTCATTTTAGAACTAATTGTGACTTAAACAGAGGTAAAAGTTCATCTGGTACCTTGTGAAACTAAGTCTTGCATCGCCCTAAAGGAGAtgtattttgcaataataaccACTGACTGTGCGTGATCTTGCTTATTAAACGGCCTCTTACCAAATAAATGAACGCATTGAATTTGAGTTAAATATGCACGATAGCGAGACGtgagttattgtaattactacattaagtaattttttgtaCGTATTGTACTAATGTACGTGAGGGACAGGACTGTAACATAAAATGCCGCCAAAATCATTAATCGCTTACCACCATGTCATTACAAACCCgtgaaagctttgtttgtccttGGAACACAATTTCACACATTTTAGATGAAGTGGAAAGTATGCGTTTCATTTTAGAAAGCATGAAACACAGTGAGAAAACCGACGAGGATACTTGtacgcaaagaaaaaaaaactttattcaacaattcggCATCGTAAAGTCACTGGGCGCCATTTTGGGAAATATCAACTGGACGCAAACTGCTCTTATTTCTTAGTCAGATGTGCcacacaaatgctgtttttggtGAAACCAGAACGTATAGAAACATGGAAGACATATCATTGCTTTACGATTGACACAGCGGGGTGTacaattgttgaataaagtcatttcataacattatggttgaaccactgaaggcagatgaactattctgtctttcatacttttctggaccggACATGTTCATTACTTGGCGGTCAATGGGACGGTCACAAGCCTCCCTGTTTTCATACAAAATATCTTGTTCCGAAGATGAGCAAagcttttcattttggggtgtaGTAACCCAGTACACCATTGAGctgtataataaaacataactatGAACGAAATTGTTTCAGCTATCCATAAATTAGAAAATCATCTGGGACC

Function

GO:

id name namespace
GO:0048747 muscle fiber development biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0001570 vasculogenesis biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0060049 regulation of protein glycosylation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152405 lncRNA downstream 57515 1741721 ~ 1744473 (-) True G103114
TU152336 lncRNA downstream 175255 1622684 ~ 1626733 (-) True G103080
TU152240 lncRNA downstream 316754 1481657 ~ 1485234 (-) True G103003
TU152232 lncRNA downstream 397128 1348194 ~ 1404860 (-) True G103000
TU152193 lncRNA downstream 511848 1289464 ~ 1290140 (-) True G102970
TU152432 lncRNA upstream 35928 1843412 ~ 1844995 (-) True G103129
TU152446 lncRNA upstream 60371 1867855 ~ 1870349 (-) True G103140
TU152454 lncRNA upstream 215758 2023242 ~ 2029167 (-) True G103147
TU152469 lncRNA upstream 272588 2080072 ~ 2083216 (-) False LOC122359217
XR_006252692.1 lncRNA upstream 272599 2080083 ~ 2083265 (-) True LOC122359217
XM_043259842.1 mRNA downstream 33917 1767053 ~ 1768071 (-) True LOC122359511
XM_043259344.1 mRNA downstream 223851 1382872 ~ 1578137 (-) False cadm2b
XM_043259340.1 mRNA downstream 223856 1382872 ~ 1578132 (-) True cadm2b
XM_043259346.1 mRNA downstream 223856 1391803 ~ 1578132 (-) False cadm2b
XM_043259345.1 mRNA downstream 223870 1382872 ~ 1578118 (-) False cadm2b
XM_043258353.1 mRNA upstream 70731 1878215 ~ 1882508 (-) True si:dkey-202l22.3
XM_043259659.1 mRNA upstream 82199 1889683 ~ 1896275 (-) True si:dkey-202l22.6
XM_043259487.1 mRNA upstream 99370 1906854 ~ 2013874 (-) True LOC122359198
XM_043259486.1 mRNA upstream 99370 1906854 ~ 2013870 (-) False LOC122359198
XM_043259485.1 mRNA upstream 99370 1906854 ~ 2013870 (-) False LOC122359198
TU152377 other downstream 12161 1777020 ~ 1789827 (-) True G103094
TU151874 other downstream 1700054 98628 ~ 101934 (-) False LOC122359153
TU152433 other upstream 37515 1844999 ~ 1845494 (-) True G103130
XR_006252662.1 other upstream 331083 2138567 ~ 2156930 (-) True scn2b
TU152493 other upstream 399863 2207347 ~ 2291926 (-) True G103183
TU152527 other upstream 866590 2674074 ~ 2675712 (-) False LOC122359207
TU152529 other upstream 866590 2674074 ~ 2675825 (-) False LOC122359207

Expression Profile