RNA id: TU170081


Basic Information

Item Value
RNA id TU170081
length 960
RNA type TUCP
GC content 0.37
exon number 2
gene id G115193
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 21977117 ~ 21979368 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgtatatacacaaataaatgttcatttttctaaatatatgctgtatgtgtgtgtatttatatatacacaataaatatacacagcacacacattatgtaaacaaaaatgtttattttgaatgtgattaattgttcgACGgcactatttaatatattaaaatgtcatttattccttaTCTTTAGCAAATCTATTAGATAGGTTATTGAGCTCCAAATCTATCTTGTTATTATCAATTAAACTATTgagcagcttaatatttttactatttgtttTGGATTCTCTGCATCTTCCTCAGAACAAATTTCTTGCTGCATCTACAGAACAGGAATATGTGTGAATTGCGTTTCCATGTCAGCTGTTAAGATGTCAAAAGACCATGTCTTATGCAAGTCTGCTGACCAAAGCACTGTATAGCTGGGACTCATACATGAAGTGTCACCAATTATACAGCATACTTTAATGATAATTTACAAGGTATAGTATGtggcaaaaaaaacagaatggaTGTATgctatattatttaatacacagtGAACTAGTTCTACTAAATGCATATGTGTTACATTTCACACGCACTGTAGCATTTCAGCTAAATGTCCACACGCTTgaaccaaataaaataacaatatcaGATCACATAATCGCACCACAAGCACTACCTCCACCACATTCGCCCACTGCTGAAAGGAAGCGATCTCTTACCGTCTCATCTGTGCAGATGGAATGGATTTGGGTGCCAAACATCACAGAGGtgaagatgaggaagaggaggccCTCAAAGcacaggaggatgaggaggatgacaGTGGCTGGAGGGGAGAAGGTACTGCACTCTGGGGTTTGTCCAGTCATCTTCAAAGCAGTAGAGAAAATGAAAGACCACCATGACCAAGGAATGCAGAGAGATCAGGGATATGTAcatctgaaaaacacagcagtTTCAAATCACCAGAATGGTAC

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko05031 Amphetamine addiction
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170026 lncRNA upstream 147586 21828216 ~ 21829531 (+) True G115157
TU170003 lncRNA upstream 282573 21693494 ~ 21694544 (+) True G115134
TU169926 lncRNA upstream 585955 21390781 ~ 21391162 (+) True G115074
TU169826 lncRNA upstream 807764 21167994 ~ 21169353 (+) True G115020
TU169778 lncRNA upstream 835087 21141042 ~ 21142030 (+) True G114983
TU170090 lncRNA downstream 17642 21997010 ~ 22001617 (+) True G115200
TU170216 lncRNA downstream 547789 22527157 ~ 22530262 (+) True G115288
TU170288 lncRNA downstream 788133 22767501 ~ 22768460 (+) True G115342
TU170376 lncRNA downstream 1003693 22983061 ~ 22983700 (+) True G115401
XR_006252753.1 lncRNA downstream 1020081 22999449 ~ 23003110 (+) True LOC122359996
XM_043260812.1 mRNA upstream 4617 21971222 ~ 21972500 (+) True tmem42a
XM_043261480.1 mRNA upstream 8570 21962220 ~ 21968547 (+) True gpd1l
XM_043261107.1 mRNA upstream 55586 21883909 ~ 21921531 (+) True stt3b
XM_043261176.1 mRNA upstream 104145 21849989 ~ 21872972 (+) True tgfbr2b
XM_043260601.1 mRNA upstream 154644 21703738 ~ 21822473 (+) False rbms3
XM_043260811.1 mRNA downstream 4522 21983890 ~ 21989916 (+) True ebag9
XM_043260213.1 mRNA downstream 24867 22004235 ~ 22010159 (+) True gdf6a
XM_043260421.1 mRNA downstream 157200 22136568 ~ 22139827 (+) True LOC122360094
XM_043261628.1 mRNA downstream 241506 22220874 ~ 22258766 (+) True eif3ea
XM_043260352.1 mRNA downstream 281933 22261301 ~ 22313025 (+) True rspo2
TU170042 other upstream 82585 21883929 ~ 21894532 (+) False stt3b
XR_006252812.1 other upstream 104145 21849989 ~ 21872972 (+) False tgfbr2b
unassigned_transcript_2160 other upstream 838165 21138881 ~ 21138952 (+) True trnae-cuc_37
XR_006252832.1 other upstream 1750040 20219644 ~ 20227077 (+) False hjv
TU169046 other upstream 2329311 19645958 ~ 19647806 (+) False LOC122360533
TU170321 other downstream 930193 22909561 ~ 22911076 (+) False LOC122359863
TU170371 other downstream 985201 22964569 ~ 22970526 (+) False LOC122360067
TU170363 other downstream 1130915 23110283 ~ 23112166 (+) False LOC122360203
XR_006252766.1 other downstream 1185198 23164566 ~ 23166279 (+) False wnt4b
XR_006252835.1 other downstream 1242689 23222057 ~ 23223731 (+) False rps9

Expression Profile