RNA id: TU170695


Basic Information

Item Value
RNA id TU170695
length 2639
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G115621
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23165193 ~ 23167940 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCATATTTGATGGTGGAATTCATTGTGAAACATTGTTACCCATGATTCTATAGAGAAATATACACCAATTGTTGAATCGCCCAGGAAAATTGTGCCAAAAGACCTCTTTGGCACTAGCCACACCCATAATGTACTGTAATCAAGTAATTTTCCTATGctacatatatgcatattttgcaataaacataaaatatattgtttctatatctttacttaattttaaagcaCTAGTTTAGTATTTCTAACTTTTTATCCGACTGTTATTCTCAGTGCTCTATTTGATTGGAGTGTTTTCCCTCAAGTGCTTTTGTCCGATATTTATTTGcttcaaatcaaaattttaGTTTTGCGATTCACCTTTTAGGATCGGTTTATGGCTTTTAACTCCTTAACAAAGATTCCTTTTGGGAAAAATtaataggggaaaaaaaactactgaaCTACAGGCTACTGAACCACACTTTTTTTCTAGCACCAAAAGCGCTTAAGCCAaactcagaaaaacaaacatttaaacatatgtACATCAGTGTGGTAAGAACTACCTAAAATGTCAGTAGCCATCTTGATAgtgtaattagattttttttattttttttgccaccAGGGGGCGTTTAAAACTTTTCAGAATGTGTGTGGCACATTTGTTTCACCAGGTTCCATCTCAGTTAGAGTTCTGCCTTAGATAGGCAGTCGTCAGCTATTCAGCGCAGTAGTTTTTTGAACAGAGCCACTGTAACATACCTCTGTGGCTCCATCAAAGCGCTCTTTCAGCACAGCACCGACCCGGCGGAACGGAGGCATGACCTTCCAGCAAGTTCTGAGCTCACAGGACCCCGAAACGCCGTGACACTTACACTCAACCTGCATGTTATGAAGGATCGCCTGAACAAATGCAGAGAAAACCGTGAAAACCGTGCAGCCTACGATGAGTTTTAATATCAGTGAAACATCTCACTCGCCTTTCGCCCTGCCTCATTGTTGTGAATGTTCATTAGCGGCCTCCCCGACGACATGCCTTTAGCTCTCTCTGGCTCATCCACAAAGGTCTGAGAGAATGCCACGCCATAGGACAGATTATCAGAGCAACCTGACCACTGGAAACCTAAGGCCGCATCTCTCCAGTTCTCCCCTGCTACAGCCTCGAGTCACAGCCACAGCGACTGCTGCTGATGAAAGAGCATGGACAAAAGCCGCCTCACGGGTGCCTGAAAACAACAGTGGAACAAAACCAAACTAAGTTGAGTACGGTTGAAGGTTGTTGGAAAATGGTCTGCTATTAATCGATAGTTTAACATCAGTACTCTGATATGGTGGTTGTCAAGCTGCATGAATATGTCcaacacaatatatattcataaatacttttttttttcggcCATGTTTTTAAAGGGTTCCTATTTGCCCAGTCATTCAGttgaaaaaacaattacataatttttccgaaatgaaatgaaaaagcttgaaatcatttgaaattacTTCATTATAGGCCATACCTTAGCCAAGATGGtaagatatattaaaaacttGTTCTGTATGTTGTGACAGTGTTTCGTTGAAACCTTGGTTCATGACTCGTCCAAAAATATTGATCCCGCGAGGGGTGGTGGAACAGTTCCAGCGGCGGTTTCGAAACTGATGTTGACACTGCAGTAgttaaaaccaaacaaatagcTGTAAACCAGAGTTTATATATCTAGATATGAAACCGTTTAAGCTTAAAGGTTAAAGCTCGTATTTGTGGGGCTGGTTGTCACAAGCAATAgagagaacagcattttttttgttagttttttttttcctctgtaacTTTTGCAGCGACAATCAGATCCAGAAAGAGCTATACTGCCAAGCGTGTTCACATACTCAAGGAATTAATCACGATTCTTTACCGTCACGTCCTTGAATGTCAGTGCTGTATGTTCACAAAATTGTCATTGCGTTTCAGTCTCGCTCACCTCCTCAATGACCATCTCTGCAGCCTTTCGCACGGACTCCATGACCTCCCCCCGTGCCCGGCACACCCCGACTTGGCCTGGTGTCAACCCCCTCAGACGGCCACATGGTTCTGCACCAGACACAGGACGCGAGCGTGGCAGACGTGCCAGAGAACTACACAGACAATACAGCACAGGAAACATGAATGCATACAcgtaaataaaagtacaatatatTGTAGGTAAATTGAAGCTGtagaagcaaacaaacaaacaaaatgatggCATAACAAACAAACTCTTTGACACAAGCCAACTTACAGCCAGTTGCTTGCCATGGTGAGGTGGGGTGCCCATAGCAACAGCAGGAGGAGTCGTCCCGTGAGAGTCACGGAGGACACCGTTGGCATCAGATTGCCTGTCTGTCTGACTACCTGTCTGTCTCTGAATTAGTGAGCAACGCTTGTTTCTTTTAGTCTTACAGCTGTGCCTGTTACGTTGGGGTTGTTCCCCTCATATCTGTCAAAGGaaataacatttctaattttgacATTGTTgcggttttcttttttaatataaccgCTTGTACTTAATCATTGCTTATGAATCAATACAATCAATACAGATTATTACTGGCATCagagtatatttatttatttttgttgtttaaatgaacaaaaagcaATATCTAAGCAAAGC

Function

GO:

id name namespace
GO:0050900 leukocyte migration biological_process
GO:0002376 immune system process biological_process
GO:0030595 leukocyte chemotaxis biological_process
GO:0060326 cell chemotaxis biological_process

KEGG:

id description
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170608 lncRNA downstream 87323 23074303 ~ 23077870 (-) True G115563
TU170613 lncRNA downstream 87323 23074303 ~ 23077870 (-) False G115563
TU170681 lncRNA downstream 91743 23072259 ~ 23073450 (-) True G115611
TU170664 lncRNA downstream 108663 23056095 ~ 23056530 (-) True G115601
TU170657 lncRNA downstream 112918 23050307 ~ 23052275 (-) True G115599
TU170714 lncRNA upstream 17110 23185050 ~ 23189650 (-) True G115631
TU170758 lncRNA upstream 158268 23326208 ~ 23327893 (-) True G115669
TU171122 lncRNA upstream 647957 23815897 ~ 23816157 (-) True G115910
TU171123 lncRNA upstream 648960 23816900 ~ 23817100 (-) True G115911
TU171127 lncRNA upstream 652579 23820519 ~ 23821825 (-) False G115914
XM_043260606.1 mRNA downstream 6291 23141067 ~ 23158902 (-) False chd4b
XM_043260607.1 mRNA downstream 6292 23141067 ~ 23158901 (-) False chd4b
XM_043260605.1 mRNA downstream 6292 23141067 ~ 23158901 (-) True chd4b
XM_043260612.1 mRNA downstream 26067 23122351 ~ 23139126 (-) True ptpn6
XM_043260615.1 mRNA downstream 26073 23122351 ~ 23139120 (-) False ptpn6
XM_043260463.1 mRNA upstream 1578 23169518 ~ 23175441 (-) True cdc42l
XM_043261105.1 mRNA upstream 41619 23209559 ~ 23221351 (-) True rbfox1l
XM_043261106.1 mRNA upstream 41619 23209559 ~ 23218205 (-) False rbfox1l
XM_043261575.1 mRNA upstream 56130 23224070 ~ 23233788 (-) False rap1gapl
XM_043261574.1 mRNA upstream 56130 23224070 ~ 23233788 (-) True rap1gapl
TU170599 other downstream 231226 22932627 ~ 22933967 (-) True G115554
TU170138 other downstream 1076139 22087649 ~ 22089054 (-) False eny2
TU170105 other downstream 1196658 21964855 ~ 21968535 (-) True G115207
TU170018 other downstream 1361389 21801475 ~ 21803804 (-) True G115149
TU170010 other downstream 1460234 21704018 ~ 21704959 (-) True G115141
TU171080 other upstream 351868 23519808 ~ 23524382 (-) True G115882
XR_006252802.1 other upstream 420245 23588185 ~ 23609841 (-) False usp45
TU171098 other upstream 501958 23669898 ~ 23675298 (-) False mchr2a
TU171232 other upstream 1158767 24326707 ~ 24327973 (-) False phactr4b
TU171647 other upstream 2499879 25667819 ~ 25676410 (-) False LOC122361130

Expression Profile