RNA id: XM_043260607.1


Basic Information

Item Value
RNA id XM_043260607.1
length 7434
RNA type mRNA
GC content 0.47
exon number 40
gene id chd4b
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23141067 ~ 23158902 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAGATGATTATTATGGTCTGTAGGTTGCGAGGTAACTATGCAGAGTTGAGTGAGTGTTGTAGGGAGGGGGGAGCGTGCCTAGGATTATTATGGGATGTCTCTACCCCCCCTGATTTCTTTGTGTGTATGAGGATGTTCGCTTCTGGTCACTGACGCTGGGGAAAGGGGAGAAGAGTGGACGACGTCTCCCAAAGATTTACACCTTTTCGgagcttctttttgtttttcagtgataGGTAGTAGTAACCTGCAGCTTTCGCGTCAGACTAAAGCTGATCATACCGCCGACTATCTACACCTTGGACTGACCTCGTCCGGACGGGAATATGTCGGGGAGTGAAGACGACAGGGACCATTTTGGACCCATGAGAGATGATGATGCCGATGAACCAATATCGGAGGCAGAAACACCCAAAtccaaaaagaagaagaaagctaAGAAAAGCCGTGAAAGCAGGAGCAGTAAACGACAGAAAGTCCTCAGAGAGGATGTTCCTGTCAGCTCTCCTGAAGTCATGGAAGCAATTCGAATGGTTGAAGGTGAGGAAGACGAGGAGGAAAGAGTGATACGATCTGAGAGTGAAGGGAGTGACTATGCCCCaagcaagaagaagaagaagagatcCAGCTCGTCCAAGGAAAGGAAGAAGGGAGGTTCAGCTGGAGAAAAGGCTGGGGGCTCATCTGGAGGAAAAAGCAAACGTAAAGACCCAGAGcctgaggaggaagatgatgacgatgatgatgatggtcaGGAGCCCAAATCATCTTCTCAGCTATTAGCAGACTGGGGAATGAAAGACATCGACTACACCTTTACCCAGGAGGACTACAACTCTCTCACCAATTACAAAGCTTTCAGTCAGTTTGTCAGACCTTTAATAGCTGCTAAGAACCCTAAGATCGCTGTGTCAAAGATGATGATGGTTTTGGGGGCTAAATGGCGAGAGTTCAGCACTAATAATCCCATGCGAGGCTCAGCGAGTGCAAACGCAGCCCTGGCAGCTGCCAACGTTGCTGCTGCAGTGGAGAGTATGGTGACCAGGGTGGATGGAGGAGGGGCTGCTCCCATGGCCACACCCACATCAACAGCAGCTCCTGCTGCACCACCCCCACCCCAGCAGCCCCCAGCAGTCCCCCTGCGAAAAGCCAAGACCAAAGAGGGCAAAGGCCCAAATGCACGTAGAAAGACAAAGTCCACCCCAAAGCCCCAGGACAAAAAATCTAAAGCGAAGAAAGTGGCTCCACTCAAGATTAAACTGGGCAATTTCAAGAGAAAACGTTCATCCAGcggtgaggatgatgatggtgagAGCGATTTTGACAGTTTCTCCATAAGTGATGGATCTAATAGTCTGAGCAGCCGCTCCAAAAGTAAAAAATCCAAGAGCtccaagaagaagaagaTGGATGAGGAGGCTGACGGCTATGAGACTGATCATCAGGACTACTGTGAGGTGTGTCAGCAGGGTGGTGAGATCATTCTGTGTGACACCTGTCCGAGAGCCTATCACATGGTGTGTCTGGATCCTGACATGGAGAGAGCCCCAGAGGGCACATGGAGCTGCCCCCACTGTGAGAAGGAGGGAATTCAGTGGGAGGCTCGTGAGGAGAGTTCTGAGGGTGAAGAGGAGAATGATGATGGAAGGAGGGATGATGGAGAGGTAGAAGAGGAGGACGATCATCATATGGAGTTTTGTCGAGTGTGTAAGGATGGAGGGGAGCTGCTGTGCTGTGACACATGCCCCTCGTCCTATCATTTACACTGTCTCAACCCTCCTCTGCCAGACATCCCCAACGGAGAATGGATCTGCCCACGCTGCCTGAGTCTTCCACTGAAGGGCAAAGTCCAGAAAGTCCTGGCCTGGCGCTGGGGTGAAGCCCCTTCCCCTATGCCCGTCCCACGTCCTGCAGACCTTCCAGCCGATGCTCCGGATCCTCCTCCTATGATTGGTCGGAAGGAGAGAGAGTTCTTTGTGAAGTGGTGCAACATGTCTTATTGGCACTGTTCATGGGTCCAGGAACTACAGTTGGAGCTGAACTGTCAGGTAATGTTCCGTAATTACCAGCGAAAAACAGATATGGAGGAACCCCCCAATCTAGAGATGGGTGCGGAGGGAGATGAGGATAAGAGCTGcaagagaaaaaataaagatcCCTTTTACGCCCGTATAGAGGATCAGTATGGGCGCTTTGGAGTAAAGTTAGAGTGGCTCTTCATCCACCGCATCTTAAACCACAGTGTGGATAAGAAGAATAATGTTCACTATCTGATCAAATGGAGAGATTTGGCATATGATCAATCAACCTGGGAGTCTGAAGACATGGACATCCCAGACTATGAGACCTTTAAACAACATTACTGGAACCACAGGGAGCTGATGCTTGGAGAGGAGGGTAGACCGGGTAAAAAGATGAAGAAGGTGAAAGTGAGGAAGACAGAAAGACCTCCTGCTAATCCTGTGGTGGATCCCACTATAAAGTTTGATAGGCAGCCGGATTATCTGGACTCTACTGGCGGCACGCTTCACCCGTACCAGCTTGAGGGACTGAACTGGTTGCGTTTTTCTTGGGCTCAGGGCACAGACACCATCCTGGCTGATGAGATGGGTCTTGGAAAGACAGTTCAGACTGCTGTCTTCCTCTATTCACTCTACAAAGAGGGTCATTCGAAGGGGCCATTCCTGGTCAGTGCTCCTCTGTCCACCATCATTAACTGGGAGAGGGAATTTGAGATGTGGGCCCCAGACATGTATGTGGTTACTTATGTGGGTGATAAAGACAGCAGAGCTGTCATACGAGAGAATGAATTCTCCTTTGAGGACAACGCCATCCGCGGTGGGAAGAAGGCCTCCAAAATGAAGAAAGAGGCTTCTGTAAAGTTCCATGTGCTGCTGACCTCCTATGAGCTGATCACAATCGATCAAGCCATCCTGGGCTCCATTGACTGGGCTTGTCTTGTAGTAGATGAAGCCCATAGGCTGAAAAATAACCAGTCAAAGTTCTTTCGTGTGTTGAATAACTACCCTCTTCAGCATAAGCTGCTGTTGACAGGCACACCTTTACAGAACAACCTGGAGGAGCTCTTCCATCTGCTCAACTTCCTCACGCCTGAGAGATTcaaTAATCTGGAAGGTTTCCTGGAAGAATTTGCTGACATTGCTAAGGAGGACCAAATTAAGAAACTGCATGACATGCTGGGTCCACACATGCTCAGAAGACTCAAAGCTGATGTCTTCAAACACATGCCCTCAAAAACGGAACTCATTGTGCGAGTGGAGCTCAGCCCCATGCAAAAGAAGTACTACAAGTACATCTTAACACGCAACTTTGAAGCTCTGAACACTCGTGGAGGAGGAAACCAGGTGTCTCTGCTCAATGTGGTTATGGACCTAAAGAAGTGCTGTAACCACCCCTACCTCTTCCCGACAGCTGCTAATGAAGCCCCTAAGATGCCCAATGGCATGTATGATGGCAGTGCCCTCACAAAGTCTTCTGGGAAACTGATGCTTTTGTGTAAGATGCTGAAAAAACTGAAGGAGGGTGGACACAGAGTGCTTATATTCTCACAGATGACAAAGATGTTGGATTTGCTGGAAGACTTTTTGGAAAATGAGGGGTACAAGTATGAAAGGATAGACGGAGGGGTGACTGGAGGGATGAGGCAGGAAGCCATCGATAGATTCAATGCTCCTGGTGCTCCTCAGTTTGTTTTCCTCTTGTCCACCCGAGCAGGGGGTTTGGGCATCAATTTGGCAACTGCTGACACTGTCATCATCTACGATTCTGACTGGAACCCGCACAACGACATCCAGGCGTTTAGCAGGGCTCATCGTATTGGTCAAAATAAGAAGGTGATGATCTATCGATTTGTCACTAAAGCATCTGTAGAGGAGAGAATTACACAGGTGGCAAAGAAAAAGATGATGTTGACTCACCTGGTGGTGCGGCCTGGTCTGGGCTCCGCCAAGGCTGGATCTATGTCCAAACAAGAGTTGGATGACATCTTGAAATTTGGCACAGAACAGCTTTTCAAAGACGAGCTTGGAGAAGGTGACAATAAGGAGGAAGACAGCAGTGTGATCCACTATGATGACAAGGCGATTGATCGGTTGTTGGATCGAAACCAAGATGCAACAGATGACACAGAGCTGCAGAGTATGAATGAATACCTCAGCTCTTTTAAAGTGGCCCAGTATGTGGTCaaagatgaggatgaggagGAGGAGGATGTGGATAGAGAGATCATTAAGCAGGAAGAGAGTGTAGATCCTGATTACTGGGAGAAACTGTTGCGCCATCATTATGAGCAGCAGCAAGAAGATCTCGCTCGTCATCTGGGCAAAGGCAAGCGGCCACGCAAACCTGTCAACTACAACGACTGCTCACAGGAGGACAGAGACTGGCAGGATGATCAGTCTGATAACCAGTCAGATTACTCTGTTGCTTCAGAGGAGGGTGATGAGGACTTTGATGAGCGATCTGAAGctaACTCTCGAAGACCAAGTCGCAAAGGCTTGAGGAATGACAAAGATAAACCCTTGCCTCCTCTACTGGCCAGAGTGGGAGGAAACATTGAGGTATTGGGCTTCAATGCACGACAAAGGAAGGCCTTCCTGAATGCAGTGATGCGTTATGGGATGCCTCCCCAAGATGCCTTCACCACTCAATGGCTCGTTAGAGACCTGCGAGGCAAATCAGAGAAGGAGTTTAAggCATATGTGTCCCTCTTTATGCGTCACCTGTGTGAGCCAGGCGCCGACGGGGCAGAAACATTTGCTGATGGCGTTCCACGGGAAGGACTGTCACGACAACATGTTCTCACGCGCATAGGTGTAATGTCACTAATCCGCAAAAAGgtGCAGGAGTTTGAGCATGTTAATGGTCAGTGGTCAATGCCCTGGATGAAAGAACTggaggaaagcaaaagagcgGCAGCCATTGCAGCAGGAGAAGATCCAAAAACGCCCTCTACTGGGACACCTGCAGATACCCAGCCTAACACACCAGCACCAGAAGACCTTTCCAAGAGCGATGATGTAAAAGAGCTAGAGGAGAAGATGGAAggggatggagagaaagagacgaAAGGCTCCAGACAGGAGGATGAGGTCATTGAGATTCCTGATGAAGGTGAGAAATCCCCCAGTCCAACAAAGAAAGAGGAGAATAaggacagggagagagagaccaaCTCGCCATCAGCAGAAAAGGATGGAGGAAGCAGAAATGAAGCAAATGAAAAGGAGGGAGACAAAGAGAAGTCCACTGAATTAAAGGACGGCTCATCTTCAGATGTCAAAGCCGAAAGTTCAGATGCCACAGGCAGTGTAGACTCATCCAAAACCAAAGAAGAATCTGAAGACAAGACAGAAAAAATGGAAACTAGCCCAGCAAGAGATGAGAAGAAAGAGCTGAAAGACGAGAAGGACGGAGTGAAGTCAGAGGACTCTGCTAAGCTGCAAAATGGAGAGAATGCCAAAGAGACAAGTGGAGGAGTAGATGGAGTGAgcgaggagaagaagaaagcagTGAAGCAGAGGTTCATGTTTAACATCGCTGATGGAGGTTTCACAGAGCTTCACTCTCTCTGGCAGAATGAAGAGAGAGCTGCCACGGTCACAAAGAAGACTTATGAGATCTGGCATCGTCGCCATGACTACTGGCTGCTGGCTGGTATCATACACCATGGTTACGCACGTTGGCAGGACGTACAGAATGACCCGAGGTTTGCCATCCTCAATGAGCCCTTCAAGGGAGAGATGAGCAGAGGAAACTTCCTCGAGATTAAGAACAAGTTTCTTGCTCGCAGGTTTAAGCTGCTGGAACAGGCTCTGGTGATCGAGGAGCAGCTTAGACGTGCTGCATATCTAAACATGACAGAGGACCCCTCTCACCCCTCCATGGCACTCAACACACGCTTCAGTGAGGTCGAGTGTCTGGCAGAGTCGCACCAGCACCTCAGTAAAGAGTCCATGTCAGGAAACAAACCTGCTAATGCAGTGCTACACAAAGTTCTCAAACAACTGGAGGAGCTACTCAGCGACATGAAGGCAGATGTCACCCGGCTCCCAGCAACCATCGCTCGGATTCCACCCGTCGCTGTGCGGCTGCAGATGTCAGAAAGAAGCATTCTTAGCCGGTTGGCCAGCCGAGGACCGGAGGTCACACAGACGCAGGCGCCACGCTGATGACCCCTGGATAAAGTTTTCACTCTTACCTCCCATAAGTCACAACGAggaatcatctcacacacaaacagacacgcACCTGGGTCAGGTGATCAGATgcaatgtgtatgtgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatctgaaataAGTTCCAGCTGCCCACACTAGTTTGGACAGAAGAAGAGTGGAGCGGTTTCTAGCTAACACACTGTGGTTACCTAATGTTTCTTGTAAAGCTCAATTTAGAGGCATTCCAACCTCCTCCATTTGAAAATCCTGTGATCACACACCTACTGACCAGAGAGATGCATACGTATGTTAGAATACACAGCACCCAAACCGTTCTCCAGTGTCATCCAGATCAGGTTTTCCAGGTCACCTCCTCTGCACTGTTGTAAGCAATGCAGGGCAAGGTTGAAGAGCTGGTGTGGATTTTTGCCTTGCGTGGAATGGATCTTTGCAGTGGGGACTCTTTCCTCCTCAGGTGTGTTTTGTCGTAATTCACACTAGTTGAAtcactgtttttgtgtgtttccaCAATTATGCTTCAAGCTTAAATTCGAAATGCCTGCTTGAACCCTGAAACATCATGTGGTTTCCAACTTGTGAAAGGTTTATGCTGATGTAAACACAATCCCTGTCCCAATACCCACATACATCTCAGTGTCCATACTTTGGTGACATAATGCCGGATAGACTGTCGGGTAATGATCCACTGAAGCAGGCTCTACAGAAATACCCTTCtaaaacacataaacactctaaaaatgaaatctaaaatgtCAACTAGAACACCTTATGTTTTTCACAGGTACAATTGGGACAGGGTCACAACTAGTATAAGGACATCAAATGACCTTCCATTCCtttagattaaatatatatattataatcaaaaaaatgtttaattatgaGAACTGCTGCTTTAAGAACCCACATTTATTCCATTTTCTCTCTCCTGATTGGCTTGTGTATAACGTCATAGAAAATAAGTCCCAGTTCATTTTCCTTACAAGAGAAGACAAAATCCCCGTAGCACAGGTGAAAAAATGCAGCTCTTAATTTAATGTCTAATTTTACACTTTCAGAAGGTCTGAATATCTCACTTTGTAATTGTCGTTGTTACCCTGTTATTGTTATGTcttatgtttctgttttgttttgttttttagaccTGCAATTAAAAGGTAACAAAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170608 lncRNA downstream 63197 23074303 ~ 23077870 (-) True G115563
TU170613 lncRNA downstream 63197 23074303 ~ 23077870 (-) False G115563
TU170681 lncRNA downstream 67617 23072259 ~ 23073450 (-) True G115611
TU170664 lncRNA downstream 84537 23056095 ~ 23056530 (-) True G115601
TU170657 lncRNA downstream 88792 23050307 ~ 23052275 (-) True G115599
TU170695 lncRNA upstream 6292 23165193 ~ 23167940 (-) True G115621
TU170714 lncRNA upstream 26149 23185050 ~ 23189650 (-) True G115631
TU170758 lncRNA upstream 167307 23326208 ~ 23327893 (-) True G115669
TU171122 lncRNA upstream 656996 23815897 ~ 23816157 (-) True G115910
TU171123 lncRNA upstream 657999 23816900 ~ 23817100 (-) True G115911
XM_043260612.1 mRNA downstream 1941 23122351 ~ 23139126 (-) True ptpn6
XM_043260615.1 mRNA downstream 1947 23122351 ~ 23139120 (-) False ptpn6
XM_043260613.1 mRNA downstream 2202 23122351 ~ 23138865 (-) False ptpn6
XM_043260611.1 mRNA downstream 3512 23122351 ~ 23137555 (-) False ptpn6
XM_043260617.1 mRNA downstream 19858 23117498 ~ 23121209 (-) True rbp5
XM_043260463.1 mRNA upstream 10617 23169518 ~ 23175441 (-) True cdc42l
XM_043261105.1 mRNA upstream 50658 23209559 ~ 23221351 (-) True rbfox1l
XM_043261106.1 mRNA upstream 50658 23209559 ~ 23218205 (-) False rbfox1l
XM_043261575.1 mRNA upstream 65169 23224070 ~ 23233788 (-) False rap1gapl
XM_043261574.1 mRNA upstream 65169 23224070 ~ 23233788 (-) True rap1gapl
TU170599 other downstream 207100 22932627 ~ 22933967 (-) True G115554
TU170138 other downstream 1052013 22087649 ~ 22089054 (-) False eny2
TU170105 other downstream 1172532 21964855 ~ 21968535 (-) True G115207
TU170018 other downstream 1337263 21801475 ~ 21803804 (-) True G115149
TU170010 other downstream 1436108 21704018 ~ 21704959 (-) True G115141
TU171080 other upstream 360907 23519808 ~ 23524382 (-) True G115882
XR_006252802.1 other upstream 429284 23588185 ~ 23609841 (-) False usp45
TU171098 other upstream 510997 23669898 ~ 23675298 (-) False mchr2a
TU171232 other upstream 1167806 24326707 ~ 24327973 (-) False phactr4b
TU171647 other upstream 2508918 25667819 ~ 25676410 (-) False LOC122361130

Expression Profile