RNA id: TU171080


Basic Information

Item Value
RNA id TU171080
length 4575
RNA type TUCP
GC content 0.41
exon number 1
gene id G115882
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23519808 ~ 23524382 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTCTACACACTGGCCGTATGGTTTCACATTGCATTTTCTACAAAAACCAGCGCGCTGTATTAAGCGCAAAAAAGACAGGAAAGCTTCAGCAACACATCTCAGTGACAGTGATCAGGGTATAGctatattctgtttttattttaattttttttttcctatttcagagaaaataaacaaaacttatCGGTTTGCATACGTCGTCTCACAAATTTCACGCTCTCGGTTTCTTTAGAGATTGCGCTGACATATCAAACCGTTTGAACGTGTAGTGCacttttcttcattcttttccACGTTTAAAAATTTCGTTCAAAAAATTGACCGAGACGTCAATAAATATAAGCTTCATccgcatattttttttttacacccgACGACATAAAACGTTCAGGGTTGATTCTTTGatttaggaaaaaaacatcatatacTACAAAATCCGATTTCTATCACAACCTCTGCGCATTTTATTATACCCACAAAATCATCCAGTTTAACGTTTGATGGAGTCTTTCTGACagagtaaataaaacaacaaataaatagctCCACAGTATTTGTAGAATTACATGACAGTTTGATCAATTAATCtatgtaaatgtttcttttgaaaaaaaaaaaaaaaagtagaacgATAATAACAGACGTCCCTGGAATTTCTGTGGAATAGATTTAcaccaaaatatgaattaaaatataagcaaaataatacaataagaaaataataataataataataataataataataatttttgattgTTGTATTGTATTTACACATAGTGACGTATAGCAAGCCCCTGGGAGAAATCTTCCATTTTTTCCAATCTTccagtgtttacattttcagtaaatcaTCACTGCATTGTGTCCCTATAAATGCGAACCGGAACCAACACAATGAAGAACTATAAAGcacacaaaatcaaaatgaacaaaaacagttaaatCCAAAGTCCAAGTATCCTTTTACTGTATAGCTCTGATGTTGGGAAAACGTGgagaatatttaataataataataataataataataatagagccCGTGTTATAAATTGATATGCTTTATAAACGatggaaatataaaatacacaaaaaacgCTTTGTCATATGAAACAATGAAGAATCGTTTGacttcaaatgaaaatattgcaGGTCACATCACTTGCTTTCCCCATTCTCCACGATACTGTGTAAATAATctctatttcaaaataattaaaaaagacattcaaatgtttgagaTATATAATATTGAATTCGTTGGGTAGAAAATAGTGCTAACATTGTTGGAGACTGAACATTGTTTactatacataaacatatagtAAAGTCAGctcataatttataaaaaagcaGCTGAATGTGGGTTAAAAAGCAACTGACTTCCGCAAGAGATAGCAAGCAATATTCGGTTAAATGACTATAAATATAAAGGCAAAATATACCAAGACTCTAATGTTAAAGAAAtaaggcaaaaaataaaataaacaaaaagctcTAAAATCTTTTCCAAATTCAAAATGATACGAAAAAGTGCTCAAGTGAGAGAATAACGTAGCTATGTcctttaaaaattatacaatatttacagCACTGTGTGGAGTCCTGTGAAACAATTGTATTTTATGGTAATATGACTAGATCGAAGGAAATGCCAGGTTTCTACCGCTAGCCCTTCGGTGACCTGTCTGCAGCTCGATACTGgaagtttcttttatttcttttgagtttAGAGTCATCcgtgttgataaaaaaaaaggagaaagacgGCAGAATCAATTGTGTGAGACTAATTTCTTGGCGCCAAGACTACAACATCTGTTTAGTCTGACCTTGCACCTCACCGTGTCTCCATGAGCAGGAGAAACGGCACATGCCCGTTATGtacgtaaaataataataatagtaattattattataatgctgATAAGATTGTTTAAAGGCCTTTTGATCCTAAGAAAAAAATGGACGAACGCTGTGGGTGGATGCATGTCACActgatgttgttttttcaaCCGAATCGATGTTCACCCTCAGTCGCCcacaacaaaagtaaaaatggcGTGTATTTTGTCAAATGCTGCAGCACTAGTCACTTTTCAGGCTAATTCCGCAAAAGAAAATGCAGTGAATGCGTCTAGATGTAAACAACTGGCTATGGGACACCCATGCTCGCGTTTGAGGGACATTTCGCTCGTCTCAAAGTGTTTGATAAATAGTAGGGTTACACCTTAAAACTGCGTCTTTTCACAGTGCTGGGTATTCACAGAACAACCGTTCTCTTTGCTCGCGCGGGGAACGCACGGTCCCCTTCTGTTGCAGCAGTACGAATTTTGAGTAACATTGAAGACGGATATAATCTGCTCTCCCGCCTCAGTAGTAGTCTAAACCGCAGCTGCTTTCACTTTGGATAGCTCCAACGTGAACGTAATCATAAATGAAGACTGAGGCAGTCAGTATGATAAGATGTGTCCTTGTTTTCgtcttgtttttgtcttgtctcACTGAACTGGCGTCTGAACCCCGTGATGCGGCGGCGTGTCTCCGTATACGTCCTCGGTACCCGGCAGAGGTCCGCCGGGAGGAGTCATccgtttctctttctgtcttctgttACAAAACCAAACCCTCACTACCTCTTTTTCCAACTGCAGACTGTCCGCCAGCGAAGTAATTTCCGACGCGGCTGGCTTTGGGCACTTAAGGAAATGGCTCTCCAAAGCCCCTTTGACGCTTACCTCGATGGAAGTCCTCTTTTTCCGTTTCCTCCCCTGCGCAGCTATCTTGTCCAAGCTCGTGGGGCTGCCAGATGTGGAGTCCGCCTCCTCCAACCACTTGTTCAACAAAGGCTTGAGCTTGCACATGTTTTTGAAGCTGAGCTGCAGGGCCTCAAACCTGCATATCGTGGTCTGCGAAAACACATTTCCATAGAGCGTTCCCAAAGCTAGTCCGACGTCCGCCTGCGTGAAGCCCAGCTTGATCCTGCGCTGCTTGAACTGTTTGGCGAACTGCTCCAAGTCGTCCGAGGTCGGCGTGTCCTCGTCCGAGTGGTCGTGGTGGCTCTGGTGCGGCTGGTGCTGGTGCTGGGACGGTGGATGGCCGTGGTCGCTGAGGTGTGGGCTGTGGTGGTCCTCGTGCGCGTCGCGCATGCTGTGGTGGTGGATGCCCTGGCCGCTACCTGGGATGAGACCGTTCACGCTGAAGCCGGGCTGCGAGTAAATAAGGCTCTGTCCGTTCGACGTGGCCATGCTGGGGATGTGAGCCGCCGTCGTCGTTCTCCATGCCCTTGAATCGTGATGATTCCCGTGCGTCTGATGTACCAGATGGGGTGGCCGCGTCTGATGCTGTAGATTGCTGGAATTGTGCATCTCGTCCCGGGAGCTCTGCACCGCTGGCTTGATGTCCTGCTCGCCGAGGGGACTGGACGACCACGGACCTCCTTCTCCGTGTGACAAGGCTGTTATCCACTGGTGCGCGTGGCTGAGCGGGTGACTGTTGCTCTGCAGCGAGTAGTCACTCTGCAACAGGGTTTGCGCGTCCCTGTAAGCCGTGGCTTGCTGCATGCTCCCAGGCTCCGAGTGTACAATAGATGGGCTGGAGGTGAGGATATTGTAATGATTGGATGCTGTAGTCGCCATGACTCTCGGAGCCGGACTGATCGCTCCTATTAAAGGAACCTTGCATTTGACAGTTACTCTTTTGCCACAGGCGTCTCCCAGGCTCTTTGCCAAGTGGACGCAGCGGCGCGCACCTGAGCTCCGCCCCCCGACGACGCTCATTGGGTGGAAAGGGATGATGGACGCGTTTTTTTGGAGGCAGCCTTTAGTTCATTGGACGCTCGAAAGTCTTAACAAACACTGCCTCTTTCCCTCAAAAGAACTCCGTGTCCTGCAGCACCTCTGAAATGTGAGGGACCGACGGGCCACCAAGACCGGAGCGAAGAACATCAAAGGTTATGCTTTTTATAACTTCGGGAGAATTCATTTCAAACTTGTCTGTTATGTAATTTGATTTCGATTTCGCTTTCGTGTGcgttacatatgtatgtatgtatgtgtcttGTTCAATAGAATGtatgcaataaatgaaaactattttatgtgatgtcatttcatatttattgatTACAGGTTTGGGgattatttatcaaaataaggGGAACTATCGGATCTTTCTAGCGTGATGTTTGCTTAAAAGTATTTGGAGAGTCAACTTTACGGATTTTACGGAGtattaaagggaaaaaaaaacgttttgcagaccaatttaaaattattaactaatttgttaaaaaatatatttgtcacATTAAAGGGTTTGATTCAGAAGAACtgccacaaacaaacaaaaccgttctttaatgaataaagttAGTGGCCATCACCACAGGCAATAACTTTTATGAGTCATATGATGCTGTATCTGGAACAAATTAGTCTGAGTAAAAATTCAGTAAATGAACAAAaggcaaagaaataaaaaaaaattatcttctGAGGTAGATAGTTAATTGAACGTTAACGTTCGTttctattacatattttaaacaggCCTATGTATGTATCTTTCATCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170758 lncRNA downstream 191915 23326208 ~ 23327893 (-) True G115669
TU170714 lncRNA downstream 330158 23185050 ~ 23189650 (-) True G115631
TU170695 lncRNA downstream 351868 23165193 ~ 23167940 (-) True G115621
TU170608 lncRNA downstream 441938 23074303 ~ 23077870 (-) True G115563
TU170613 lncRNA downstream 441938 23074303 ~ 23077870 (-) False G115563
TU171122 lncRNA upstream 291515 23815897 ~ 23816157 (-) True G115910
TU171123 lncRNA upstream 292518 23816900 ~ 23817100 (-) True G115911
TU171127 lncRNA upstream 296137 23820519 ~ 23821825 (-) False G115914
TU171128 lncRNA upstream 296137 23820519 ~ 23821387 (-) False G115914
TU171126 lncRNA upstream 296470 23820852 ~ 23822288 (-) True G115914
XM_043261198.1 mRNA downstream 116178 23389423 ~ 23403630 (-) True mms22l
XM_043259987.1 mRNA downstream 150855 23367501 ~ 23368953 (-) True calhm6
XM_043259989.1 mRNA downstream 152435 23362337 ~ 23367373 (-) True calhm5.1
XM_043260514.1 mRNA downstream 158434 23358473 ~ 23361374 (-) True rwdd1
XM_043260512.1 mRNA downstream 171794 23339451 ~ 23348014 (-) True kpna5
XM_043261851.1 mRNA upstream 2706 23527088 ~ 23536822 (-) True fbxl4
XM_043260066.1 mRNA upstream 32393 23556775 ~ 23566844 (-) True faxcb
XM_043260068.1 mRNA upstream 42676 23567058 ~ 23572317 (-) True coq3
XM_043260065.1 mRNA upstream 48589 23572971 ~ 23579881 (-) False pnisr
XM_043260063.1 mRNA upstream 48589 23572971 ~ 23579881 (-) False pnisr
TU170599 other downstream 585841 22932627 ~ 22933967 (-) True G115554
TU170138 other downstream 1430754 22087649 ~ 22089054 (-) False eny2
TU170105 other downstream 1551273 21964855 ~ 21968535 (-) True G115207
TU170018 other downstream 1716004 21801475 ~ 21803804 (-) True G115149
TU170010 other downstream 1814849 21704018 ~ 21704959 (-) True G115141
XR_006252802.1 other upstream 63803 23588185 ~ 23609841 (-) False usp45
TU171098 other upstream 145516 23669898 ~ 23675298 (-) False mchr2a
TU171232 other upstream 802325 24326707 ~ 24327973 (-) False phactr4b
TU171647 other upstream 2143437 25667819 ~ 25676410 (-) False LOC122361130
TU172219 other upstream 2855290 26379672 ~ 26384187 (-) True G116604

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00019991 True 3272 mRNA 0.42 1 NC_007127.7 32559821 ~ 32563092 (+)