RNA id: XM_043260064.1


Basic Information

Item Value
RNA id XM_043260064.1
length 2982
RNA type mRNA
GC content 0.53
exon number 12
gene id pnisr
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23572971 ~ 23579881 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCAGAGTCCGGCGCTTTTTCTTCGCATCAGCCTCGGCGCCCGCTGAACTAGTCAATTTCGTGCGTTTAACCCGAGAGAAGAAAGTTTTTAATAAGTGTCGATATTGAAGACGCGCGGCCTAACGCTTGCGCGGCGACGCTTATGTCTATTTAATTCACGTCGTAATTGCATTCTGTGAAACACGGAAAGGATTCACACGGTGAGAGATGTGGGACCAGGGAGGACAGCCCTGGCCTCAGTGGCCCTTGGGCTCACAGCAGCAGTGGATGCAGTCTTTTCAGCATCAGCAAGATCCAGgacAAGTAGACTGGGCTGCTCTAGCACAAGCATGGATTGCACAGAAAGAATCCACCGGAGGGGTTGCCGAACAGCAGGGGGTTCAGCCCAACGGCCAGGATATACAGAACATGGAACCTCCAGCCCATAATAACCACGGTGCCTTTCCCGGCGATCATAATTTTGGAAGAGGTTGGCAACCTGAGTGGGGAATGCATGGccagcctcctcctcctccccctccgGAACAAGCATGGATTCCTCCTGGACAAGGACCGATGGATGTCGTCAACCCGTCGGAAGACAGCAACAGTCAAGATAGTTTGGAGTTTCCTGGAGACCCACACCGTGGAGGCTTTCCTCAAAACAGTCATGGGTTTGGGGGTCAGCCCGAGCCTTACCCTATGGGCCCAGTTGGCGTCAATCAGTTTGATTATCAACATGGAGCAGCACCAACAGGGGCAGCATATGGACCACCCTCCACCGGCTTTCATGCACCTTATTGGCCCGAAGGACCGCAGAACAGAAGAGACCGGCTCCCGGGCTTCCGACCAGAAAGGCCCAGATCCCCCAATCAGATAGGAATTAAACCAGAGGCACCTACTCTCgATGCTGTTAAACGGAGGACTTTGCCTGCTTGGATTCGAGAAGGCCTTGAAAAGATGGATCGTGAGAAGCAGAAAAAGTTGGAGAAGGAGAGGATGGAGAAAGAGCGTGCTGAAATGGCAAATAATGAAAGAGATAGCGATATGGTAGAGGAGGAAGGTGATGGGCCTCGGTTGCCACGCAAGAGCAAATTTGacagtgatgatgaagatggtgAAGAAGATGGCGCTGGGGAGGACGCCGTGTCGGGGAGAAGGTTGGAGTTTGGTGTTAAAAGTTCTCCTCCTGTTCAAGAAGACCAAAGTGAGCCAGAAATGACAGAAGAGGAGAAAGAGTTTCAGTTGATGCTAATGACTAAAACTCTTCTTACTGAAGTCCTCCTTGAAGTCACAAATGAGGAAATCTTCCTGGTGGCTAAAGAGACCCATCGCAAAGCCACTAAAGCTCCTGCAAAACAGCTGGCACAGTCAAATGCACTGGCTTCTCTGACTGGTCTCGGAGGGCTGGGTGAGTACGGCTCGGACGAGAGTGAGAATGAGGAGCGACGTGCGAAGGGCTCGGACTCATCGGACACCGATGATGAGGAGCTGCTGCACCGAAGTCGCCAGAAACAGGACGCCTTCCGTCGCAAAGAGAGGGAGCAGCAGCAACTGCAGGAGAGGCTGGCACTGGAGGTACAGACTGTAAAAGaAGACTTGGCATCGGACAGAGTAAGCAGAGAGAGGGCAGGTTATGAGGAGGAGCAGACGGAGTTTAAACACAAACAGGAAGTTAGGGAAAGGGAGGCAGAGCCCACATTAGAGCGTCGCAGGTCACGTAGTGAGCCTGAGGTCAGTGAGGTCAAGCGGGCGAGCAAAGAGCACACAGGGCGTAACGGAGGAAGTGCCAGCCCCTCGCCAAGTGAGCGACGTAGCCGCACCTCCAGCTCAAGCTCTTCTAGCAGCCgttcctcttcatcctcctcatcctcagcCTCCTCTCACAGCTCCTCCCGCTCCTCGTCTCCCAGACGGAAAAGGCGACGCAGCCGCTCCGCCTCTCGTGGGACTCGCAGGCGCAGCCGAAGTCGCAGCTCTCGCAGACGACAGTCAGAGCGCGACAAGGCCAGAGACAGAAGGCGGGGCAGCCACGCACGTAGCACCGAACGTTCCTCTCGCCATAGGAAGCGCAGCCATTCGCGGCAGCGCAGGTCCAGCAGGGGCCGCAGGAGCAGGTCCAAGGCCAGTCGCAGCCGCAGCAGAGAGAGGCGGCGCAGCAGGGACCGCAGGCGCAGCCGAAGTCGCAGCACGAGCCGCAGCAGGAGGAAACAGAAGGCCTCCAGCAAGGAcagggagagagacaggaggAAAGAGAGGAGCCGGAGTCACGAAAAGGATAAGAAGAAGAAAGAttcagataaaaagaaagacaaacagaagGGCAAGGAGAAAGAGGGCGAGGGCAGTTCAGTAAGGGGCGAGGAGGACGACGCCAAATCGAGGCGGAAAAAGGAGAGCGACTCTCACAGTGAGAGGTTTTCCCGGCAAGACAGTAAATCTAGCAAAAAAGGCTCCGCCAAAGCTAGCAAGAAGTACTCTGATTCAGAGTCCAGCAGGAGCAGGTCCCCTTCCCCTGAGGTTAGCAAAGAGAAAAAGTCAAAGAAATCAAAACGTAGTCGGTCAAGGTCAACGGAAAGGTCTCACAAGTCTGGTAAGAAGGCAAGCCGCAAACACAAGTCTAAGTCACGATCAAGGTCAACATCTCCCAGCCGCCGCAAGCGTTGAGGGGCGTTCTGCCTCTGATCTGTgcacttctttttaaaattccacGAGTTAACAGGCTTGTCTCATTATCGAGGCAACGTTGTAGGTGAACTCTCCACTCCAAACTCCCTCACTCCcttctttttgtaaatatatggtATTTTTAAGTGTTGTCTTCAAAACAGGAGATTTTGAAtgatagtttctttttttttgccttgtatTATGCAAGACTAAGCGTTCAAGTAGTCAATAGAGCCTTGAAActgtaacaattttaaaaccTAACACCAGAGGAAATAAATTCTCGTTTCATGTAAATTGTCCAATAAAACAAGAATGATTCTTTCTGTCTGA

Function

GO: NA

KEGG:

id description
K13170 PNISR, SFRS18; arginine/serine-rich protein PNISR

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170758 lncRNA downstream 245078 23326208 ~ 23327893 (-) True G115669
TU170714 lncRNA downstream 383321 23185050 ~ 23189650 (-) True G115631
TU170695 lncRNA downstream 405031 23165193 ~ 23167940 (-) True G115621
TU170608 lncRNA downstream 495101 23074303 ~ 23077870 (-) True G115563
TU171122 lncRNA upstream 236131 23815897 ~ 23816157 (-) True G115910
TU171123 lncRNA upstream 237134 23816900 ~ 23817100 (-) True G115911
TU171127 lncRNA upstream 240753 23820519 ~ 23821825 (-) False G115914
TU171128 lncRNA upstream 240753 23820519 ~ 23821387 (-) False G115914
TU171126 lncRNA upstream 241086 23820852 ~ 23822288 (-) True G115914
XM_043260068.1 mRNA downstream 654 23567058 ~ 23572317 (-) True coq3
XM_043260066.1 mRNA downstream 6127 23556775 ~ 23566844 (-) True faxcb
XM_043261851.1 mRNA downstream 36149 23527088 ~ 23536822 (-) True fbxl4
XM_043261198.1 mRNA downstream 169341 23389423 ~ 23403630 (-) True mms22l
XM_043259987.1 mRNA downstream 204018 23367501 ~ 23368953 (-) True calhm6
XM_043260939.1 mRNA upstream 3227 23582993 ~ 23609834 (-) True usp45
XM_043260465.1 mRNA upstream 88299 23668065 ~ 23675345 (-) True mchr2a
XM_043260941.1 mRNA upstream 97224 23676990 ~ 23736637 (-) True me1
XM_043260942.1 mRNA upstream 97224 23676990 ~ 23736620 (-) False me1
XM_043260773.1 mRNA upstream 172570 23752336 ~ 23787700 (-) False snap91a
TU171080 other downstream 48589 23519808 ~ 23524382 (-) True G115882
TU170599 other downstream 639004 22932627 ~ 22933967 (-) True G115554
TU170138 other downstream 1483917 22087649 ~ 22089054 (-) False eny2
TU170105 other downstream 1604436 21964855 ~ 21968535 (-) True G115207
TU170018 other downstream 1769167 21801475 ~ 21803804 (-) True G115149
XR_006252802.1 other upstream 8419 23588185 ~ 23609841 (-) False usp45
TU171098 other upstream 90132 23669898 ~ 23675298 (-) False mchr2a
TU171232 other upstream 746941 24326707 ~ 24327973 (-) False phactr4b
TU171647 other upstream 2088053 25667819 ~ 25676410 (-) False LOC122361130
TU172219 other upstream 2799906 26379672 ~ 26384187 (-) True G116604

Expression Profile