RNA id: XM_043260213.1


Basic Information

Item Value
RNA id XM_043260213.1
length 2609
RNA type mRNA
GC content 0.46
exon number 2
gene id gdf6a
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 22004235 ~ 22010159 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCACTCGAGACACGCCACACAGATCTCGCGCTGTCCGCGCTACTGAGACGAACACAAACCCAAAAAAACCCCGGCTTCACTGGGAGACGCGGCTCGCCTTgacttttttttggggggggacAGTAACACCATGGATGCCTTTCGAGCAGTCGCCTTTTACGCGCTCTTCATTTTCCTTTGGAGTTTACCGCGTTGCCAGTCAGCTGCGCTTGTATCGCAGAAAAGGAGCAAGGGTTCCAGGAGCGCGTTTGATGGGCAAAGGTCACCCAAATTTCTTAAAGAGATTTTCGCATCCTCTCCGGTTGCGGGTCGTCGGGATGATTTAAAGGACCCGGTTGTGCCTCACGATTACATGATCTCTATATACAGGACTTACTCCGCCGCTGAAAAACTGGGGCTCAATGCAAGTTTTTTCCGCTCTTCAAAGTCTGCAAATACCATAACGAGTTTTGTAGACAGAGgaaaagACGATCTCACGCTCTCTCCTTTGCGAAGACAAACGTATCTGTTTGATGTCTCAACTCTCTCAGACAAAGAGGAGCTGGTCGGTGCTGAATTAAGGATATTTCGAAAACCGCCCGGGGATGGCCAGCCGTCCCCATCAGGCGTCTACACTCTTCATTTACTCTCGTGTCGATCAGAGAGGCCGTTGGCTTCCAGATCCCTTGATCTTCAGGATTCCCGAAAAGCAGAATGGGAGGTTCTGGACGTTTGGGgaatttttaaaagcagacaTCAAGGGAGTCAGCTTTGTCTCCAGCTCAAGGTTACGCACGGCAAATCTGACGCAGAGATTGACCTGAAGCAACTGGGTTTCCACCGGCACGGCCGGACGCAGCAAGAAAAGGCCATATTGGTGGTCTACACGCGGTCTAGGAAAAGAGAGAACTTGTTTAACGAGATGAAAGAGAAGATCAAGTCGCGCGGAGACGacgacgaggaggaggagagcgCGCTGCAGTTCAAAGCCAGGCGCAGACGGAGAACCGCGCTCAATAATCGCCACGGGAAACGGCACGGCAAAAAGTCCAAATCGAGGTGCAGCAAAAAAGCGCTGCACGTTAATTTCAAAGAGCTGGGATGGGACGATTGGATAATCGCTCCGCTGGATTACGAAGCCTACCACTGCGAGGGCGTGTGCGACTTCCCATTGAGGTCGCACCTGGAGCCGACCAACCACGCCATCATCCAGACGCTCATGAACTCGATGGACCCCAACAGCACGCCGCCGAGCTGTTGCGTCCCCACAAAACTCAGCCCCATCAGTATACTTTACATAGACTCCGGTAACAACGTCGTGTACAAACAGTACGAGGACATGGTGGTGGAACAGTGTGGCTGTAGGTAGCGAATCACACACGAGGGTTTGGCACGaaggcataaaaaaaacacttgaacgATGCGTAAAGACGCGCTGGAGCCGCCCAAACTGCGCATTCACACCTATGCAAAAGGGATTCTTCCATCAGAGACATTTTTGACGATTTAGACGATCTCCACCGGCCACTGTTCACGGGTGCGCCAAGAGCGCGTGTACAGTTTCTCTAGACTTGGAACAAAATTGGGTTTTAGGAGGTCCGTCGTCATTTTCCTTACACATGCtgggtttatttttgtaattacgcgtccaaaaaaaacaacaactaaatatttctttaacgAGCTGTCTCTCGGACGAGGCAGGTAGAAGAAACGCCAGATTTAGCGCGTAACCGTCTGGACAGGATTCACTGGGGATTGTGTTACACTATTATCTCTGTGGACTCAGAAGAATGCGGAGACGGGCACCTGTTCAAACTCATCTGTTAGTTATATGGATAAGATACTGTACGGTATACGGATGATAACGAACGAGCAAAACGCAGTGCCCTGGAaacgcttctttttttttttacgaccGCCAGCGCGTAATTTTCaggcattttctgtttttgtgggCAAAGGTGAATGTACCAAACGCTAAATAAGACATAAAGCGATTCTGCTTCGTCcctgcagagagaaagagagagagagactgactgactgatgttttttttgaggAGCATCGGGTAACGTTGTcgagtaaatgtttttttgaagtgCCTGGACCTTTCCACAAAAATCCACGAAATATCATTTTGTACTTTCtgagaagacaaaaaaatggaaatccATCAACGTTTGCATCTTTACAAAATGCACTTCCGCAACTGTCCAAGTAGTCTGGAAGGAGCGTTTTTCCTGTCGACTgacaaggaaaaaaagagactcGAATGCgagattatatttaaatgcacattagcTTTGAATGCACTGTTGTTCATTTTATGagctgtaaatatttgtaaagtaAAACCTAAAGTGCAGCGTATGAAGAAATGCGAATCCACATTTCTttgttaatgtacatttataaatgcactCAAATCGCTATAATTTCTattctataattattttattatttgtgatgtACAGAGTTTCATGATAATCGTGTATTTCTTACGCtgataaaacaaatttaatttaaaatgtattcattattgCTGAGGGTGGAAATACCATTATCGATGTCTACCTCATAATTGCATAGAATCTACGTTCTGAGGTGCATTCAGCTAGAGTTTAA

Function

GO:

id name namespace
GO:0048514 blood vessel morphogenesis biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0048264 determination of ventral identity biological_process
GO:0030510 regulation of BMP signaling pathway biological_process
GO:0031076 embryonic camera-type eye development biological_process
GO:0001895 retina homeostasis biological_process
GO:0048706 embryonic skeletal system development biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process

KEGG:

id description
K20012 GDF6; growth differentiation factor 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170090 lncRNA upstream 2618 21997010 ~ 22001617 (+) True G115200
TU170026 lncRNA upstream 174704 21828216 ~ 21829531 (+) True G115157
TU170003 lncRNA upstream 309691 21693494 ~ 21694544 (+) True G115134
TU169926 lncRNA upstream 613073 21390781 ~ 21391162 (+) True G115074
TU169826 lncRNA upstream 834882 21167994 ~ 21169353 (+) True G115020
TU170216 lncRNA downstream 516998 22527157 ~ 22530262 (+) True G115288
TU170288 lncRNA downstream 757342 22767501 ~ 22768460 (+) True G115342
TU170376 lncRNA downstream 972902 22983061 ~ 22983700 (+) True G115401
XR_006252753.1 lncRNA downstream 989290 22999449 ~ 23003110 (+) True LOC122359996
TU170358 lncRNA downstream 998445 23008604 ~ 23009835 (+) True G115384
XM_043260811.1 mRNA upstream 14319 21983890 ~ 21989916 (+) True ebag9
XM_043260812.1 mRNA upstream 31735 21971222 ~ 21972500 (+) True tmem42a
XM_043261480.1 mRNA upstream 35688 21962220 ~ 21968547 (+) True gpd1l
XM_043261107.1 mRNA upstream 82704 21883909 ~ 21921531 (+) True stt3b
XM_043261176.1 mRNA upstream 131263 21849989 ~ 21872972 (+) True tgfbr2b
XM_043260421.1 mRNA downstream 126409 22136568 ~ 22139827 (+) True LOC122360094
XM_043261628.1 mRNA downstream 210715 22220874 ~ 22258766 (+) True eif3ea
XM_043260352.1 mRNA downstream 251142 22261301 ~ 22313025 (+) True rspo2
XM_043261393.1 mRNA downstream 543604 22553763 ~ 22639975 (+) True adgrb1a
XM_043261396.1 mRNA downstream 543604 22553763 ~ 22639975 (+) False adgrb1a
TU170081 other upstream 24867 21977117 ~ 21979368 (+) True G115193
TU170042 other upstream 109703 21883929 ~ 21894532 (+) False stt3b
XR_006252812.1 other upstream 131263 21849989 ~ 21872972 (+) False tgfbr2b
unassigned_transcript_2160 other upstream 865283 21138881 ~ 21138952 (+) True trnae-cuc_37
XR_006252832.1 other upstream 1777158 20219644 ~ 20227077 (+) False hjv
TU170321 other downstream 899402 22909561 ~ 22911076 (+) False LOC122359863
TU170371 other downstream 954410 22964569 ~ 22970526 (+) False LOC122360067
TU170363 other downstream 1100124 23110283 ~ 23112166 (+) False LOC122360203
XR_006252766.1 other downstream 1154407 23164566 ~ 23166279 (+) False wnt4b
XR_006252835.1 other downstream 1211898 23222057 ~ 23223731 (+) False rps9

Expression Profile