RNA id: XM_043260222.1


Basic Information

Item Value
RNA id XM_043260222.1
length 3385
RNA type mRNA
GC content 0.47
exon number 11
gene id si:dkey-33i11.1
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 19251356 ~ 19259603 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATACGTGTAAACTACCTATCCTTTTTGAATAAGGAAGGCAGCAAAGtcaatgtgttttaaatgacatgCTTCCTGCCGCCCCGGTTCCTCTTAacgtgtttttgtgtgtgtgaacgagAGGGATGTGGATGTCAGCAACTTGTGGTTATTGCCTCGTGCACCTTGCTGAAGGTGGCGTAGAGTTTCATTGGAGACAGAGTTTAGAGGCTCAGAGAGACAGGAGGTGAGACAGTGGGATGGCCAGCCTATCACCACCCTTCAACTTCTGCTTTCTCTGGCTCAGCGTCCTACACTGTGTGTCTGGTGCCTTTCTGCTCCCTCTTAAACGCATGTGCGTGTCCATGCATCCACAGACGGCTGGCAGCGCTTGCTGAAGAGCATCAGAACCAGGGCTGAGATGTGGGTGCATGTATTTGTGACCTCTGTGCTTCTTCTCTCAGGAGTCGGGGCGAGTAAGTGGCTGGTGTATTTCTCCAGGACGGACATCTGCGTTTGGGCCGGGACCACAGTAACACTGCCGTGCCGTTATGATTACCCTTCACCCTACAGCTCTACGCGGGTCATGTGGTTTCACATCTCTGCAGAAGGCAGACGGGAGGTGGCTTACCATACTGATGGGAATCTGTTGAGCCCTTCGTACAGGGACAGGATCAGATATATAGGGGGCCACAAAAGATGCAGTTTGCAGATCACGAACGCGAAGCTGAGCGATGCAGGAACGTACCATTTCAGATTCGAGACCGACAACCAGCAGGGCCGGTGGACCTCTCCTGACGCCATCACACTGTCCGTCACAGAGCTTCAGGTTCATGTACATCCACCGAGAATAGGCAACATGTTTGCTGCTGGCGAGACAGTCTTCCTGAGCTGTGTGGCGCGAGGCTGTGCCGCCCCTGGCAAAAACTTTGCCCTTTATCGGAATGGGCTTAACTTGGGTCAATCCAACAAGCTGTCAGCCATCTATAACTTTGACAGTCAGCATGCAGGTACCTACACCTGCCGTCCAATACCTCCTCAAAACGTTCAGTCACCGGGAGTCTCCCTGGCTCTGGGATATGCTCCTCGCTACACCGCGGTGCAGATCACCCCTCGAGAGGCGGTCAGGGAGGGCGATTCGGTGACTTTGACCTGCAGTAGCGATGGAGCTCCGCCAGCAGAAAGTTTTGCCTGGTTTAAGGAAGGAGAGAGTGGCAGCGTGCCAGACAGCTTTAAACCTGAGCTGAGATTGTGGAGTTTGGACTACAGGGACCATGGAGAGTACTTCTGTGTGGCCCGCAACCCGCTCGGCACAGACCGGTCCAGACCGCTTTTACTCAATGTTACCTACTCCCCAAAGAACACCAGAATCCTCATCGGTCCTAAAGGAGACATCAAGGAAGGGTCTGCTGTCAATCTGACCTGCAGCAGCAACGCTAACCCTGCTGTGCAGAAATACGCCTGGTACAAAGTGAACGGTGGTCAGCCCTGGACCAAAGGCGCTGCTCAAAATCTCACCTTTCCTAGCGTGCGTTCCCATCATGCTGGACAGTACTACTGCACCGCGTGGAACGTGTTCGGCATGGGGACGTCACCCATTATTTCCCTTATAGTACTGTatgcccCCAAAAACACCTCTGTGCTGGCTCGGCCTTCCACTGTGATCGAAGCGGGCAGCTCGTTGACGCTGACCTGCATCAGTCAGGCCAATCCGGCGGTGGAGAACTACACCTGGCACCGGATCAATGCGGCTGACGCCTGGGAAACCCGATCGGGTCCCAGCTACACCATTGCTGAGGTCAGCCCTGGAGCCAGCGGCCAGTACTACTGCGAGGCCCGAAACCGCATCGGAGCGCACAGCTCCCCGGTTCTGACGGTGAAAGTTCGAGGTCGACTGAAGGTTATCGCACTGGCATCTGCAGTAGGCGTTTCTGTCGGATTAATATCTCTAACCGTGGTCGTCATGATCAGtaaaaacaTGCATCGCGTGGACATCGAAAATCTTGAGGAGGAAAAAGAGTGTTCGCCAGTAGTTGACTTGCCAGTGGACCATACACCGTTCAGTAAATCAACCTCAGAGACGTTTCTCATAAAGAACGCAAAAATGTCAGACATTCCGCAACTTCGAAATGAGTTTTATTTGGTTCAGGAGGAGCCCGAGGAGATTTACGAAACCACCCACCCCGCCATCATGCCCCTGAAAGAAGCCTCTCAGAGCGCCGAGGAACAGGGAAAAATCAACTACATTACGGTGCATTATTCTCGCATGCCCAGGTTAAACACAATTACACAGTCCACGCGTGCTGGTTTGCGCCAGTCCTCTGTCGTATTAATGCCACGGTTATTGTGTCTGTTATCTTTATTTACAGTCGGGACCAGGCGAAGGTCACAAACATACCTCTAGATGGAGACAAGACGCTCAAAGATGGGCCTAATGTTGTTTATACCGTCCTCACCAACCAACCGATAGATGAAGTAGACGAATCTGGAGTGTAAAGCGGTCAGCCGATGGAAGAAATTGTGAAAaccgttttttttaatgacatgcaCTTACGGACCATTTGGTGTAGCCTGAATGTCAGAGACTTGAAAATAGGATACAAAAGTAGAAAAAATACCCACTGGATGGTCAGTCTGATTGCGTCCAGCTGCAGCTTGCCCTGATCAAATCCAGCTGCTCAAAactatacactactgtttaaatgtttgggatcagtaagattttttaaggttttttgaAGCAGTCTCTTACGctctttattccttttcaccaagaacacagtaaaaacaggcGTATAGTTAAGTGATtagaatatataataactttgtattacgttttaaaatgtaattttcagcatcactgaGCAGCATTCGGTCACATGATGCTTCATCAATCAGTTGCTtgctgattttcatttttattaatgtgtgatatttttgtggaaacgcATTCTTTTCGTTTATGTTTGATAAATAACTTTAACAGAAATTTAGAAATAGGCATTTTTtggaacattataaatgttttactgtcacatctgatgcatccttgcttaaaaaacaacaacaacaaaaaaatatgttatatgttcATGTGTGATACGATTAAATGCAACATAAACAAATGATCCCACTTAGTAAATActaaatttaattaacattaacaaacaaaaaaacaatatctataTGCATATTCTTGGCATTACTGCCATATCAGAATACTGAAGACACATGCAATAtccgttgttgttgttgttgttgttgttgttgtggagCTGATTGAAGATTCAAGGGTAAGTAAATAACAACACTGATAACTGAAGGTAGAATGAGAGGCGGTTTTCTATGATTTACAATGTGAGATTTCTACTGTATCTAACCTGCTGTCTTAATAAATTCCTCACTATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168807 lncRNA upstream 3036 19245933 ~ 19248320 (+) True G114345
TU168816 lncRNA upstream 45392 19202394 ~ 19205964 (+) True G114354
TU168784 lncRNA upstream 95289 19095730 ~ 19156067 (+) True G114328
TU168785 lncRNA upstream 95289 19095730 ~ 19156067 (+) False G114328
TU168765 lncRNA upstream 138629 19068602 ~ 19112727 (+) True G114316
TU168828 lncRNA downstream 20810 19280413 ~ 19283515 (+) True fxyd11
TU168830 lncRNA downstream 24175 19283778 ~ 19292881 (+) False fxyd3
TU168842 lncRNA downstream 48661 19308264 ~ 19309214 (+) True G114379
TU169042 lncRNA downstream 388301 19647904 ~ 19648864 (+) True G114520
TU169094 lncRNA downstream 419780 19679383 ~ 19679686 (+) True G114556
XM_043261351.1 mRNA upstream 10717 19214486 ~ 19240639 (+) False rgl2
XM_043261347.1 mRNA upstream 10717 19214489 ~ 19240639 (+) True rgl2
XM_043261349.1 mRNA upstream 10717 19214489 ~ 19240639 (+) False rgl2
XM_043261348.1 mRNA upstream 10717 19214489 ~ 19240639 (+) False rgl2
XM_043261346.1 mRNA upstream 10717 19214490 ~ 19240639 (+) False rgl2
XM_043262056.1 mRNA downstream 3011 19262614 ~ 19273271 (+) True hpn
XM_043262057.1 mRNA downstream 3011 19262614 ~ 19273271 (+) False hpn
XM_043261073.1 mRNA downstream 20780 19280383 ~ 19283440 (+) False fxyd11
XM_043261071.1 mRNA downstream 24158 19283761 ~ 19292879 (+) True fxyd3
XM_043261070.1 mRNA downstream 33424 19293027 ~ 19296789 (+) True LOC122360453
TU168498 other upstream 393926 18649391 ~ 18857430 (+) False G114131
TU168594 other upstream 411128 18827254 ~ 18840228 (+) False LOC122360132
TU168577 other upstream 430220 18809154 ~ 18821136 (+) True LOC122360692
TU168569 other upstream 490454 18758384 ~ 18760902 (+) False LOC122359904
TU168504 other upstream 571276 18679190 ~ 18680080 (+) False LOC122360853
TU168846 other downstream 67501 19327104 ~ 19328763 (+) True G114382
TU169046 other downstream 386355 19645958 ~ 19647806 (+) False LOC122360533
XR_006252832.1 other downstream 960041 20219644 ~ 20227077 (+) False hjv
unassigned_transcript_2160 other downstream 1879278 21138881 ~ 21138952 (+) True trnae-cuc_37
XR_006252812.1 other downstream 2590386 21849989 ~ 21872972 (+) False tgfbr2b

Expression Profile