RNA id: XM_043260435.1


Basic Information

Item Value
RNA id XM_043260435.1
length 2141
RNA type mRNA
GC content 0.46
exon number 17
gene id sh3d21
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 25007746 ~ 25019449 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tctctctccttctcagGGTATAACGTGTCTTGACTAgctgagaattttttttttcaacaacaCTAATATGTAACTAGAAAGAAGGAGGTCCAACAAAGCTTTTCCTGTCTGTGGATTGTGTAATACCACTAAATCAAGCAGGGATTCCATGACACTTTGAGAACTGAACAGAATCTTCATTGTCAGACTTGGTGCTCTAAACACGGCTTTCAAGGGGCCATGGAGGTGCTTGTGCTTCTGGACTTTGAGGGGACGAGTCAAGATGAGTTAACGGTGCATGTTGGAGATGTGGTGAAGAACGTCTCGAAGAGCAAAGAGGAAGGATGGCTGGAAGGAGACCTGAGAGGAAAGAGAGGCATGTTCCCTAGCAACTTTGTCAAGGAAGTGCCCATTTACCTAATAGGGGACAGCAACAGAGAGCCAAGAAGCATGAGGAAAACGAAGAAACCGAAGGTACAGACGAGGAAATGCGAGGTGGCTTTTCCCTACTCCGCCGCGCACGAGGACGAACTGGAGCTGGTTGTCGGGGAGACCGTCGAGATCCTCAGAGAGATTGAAGATGGTTGGTGGatgggaaagaaaaacaacCAAATAGGAGCCTTTCCATCCAATTTTGTCAAGGAAATTTTTGTTCCTTCAAAGGATGCCAAGTCAACTGAAGTCAAATCTAGGCCTAAACTCTCTGAAGCTGTCTTCAATAAAGAGGGAAAAGTACAACAGAGAGCCAgtttaaggaaaaaaacatcaagtGTCAAGGAATGCTGTCAGGTCATGTTTGACTACACGGCTGTTGCCGAAGACGAGTTAAACCTGAAGAAGGGAGACGTCATAGCAATCATCAACAAGTCCACTGAGGACGATGGCTGGTGGGAGGGGGAACTGAACGGACGCAGGGGCTTTTTTCCTGATAACTTCGTCATGGTGATCCCAGCGGATGCTTTTCATCCTGGAAATGCAAGCCAGCCACCGGTGAGAAGTGGCTCTCAGAAAAACGCAGGGAACCAGATGCCAGCAATGGACCAGAACAGctctgacacaaacacaaagacagagaCTAAAAGTAATCATTCTGACCACAACTGTGACAAACCGGACTCTAAAGACTTTCGAAGTGATCCGCCTGGTAAAATTAAGTTGCCTGGTCTGCACAAACCACCCGTTCCACCACCACCAGTGAAGGAGAAGCCCATAAAACTAGTACCAAAAAATGAAGAGCCACAGCCTGTCTTTCCTAAACAACAGCCCCCAGCTTCACCAGTACAGAAAGAGGTTAAAGAGAAAGCCCCTGATCAGTTTGATAGTGTAGATGTGTCCTCAGAGAAACTGAGCCATCCCACAGCCAACAGAGCCAAACCTCCACAGAGAAGACCACCAACAGCCCTCACCTCCGCTGCACAAGTTCCAGCTGAAATTGAAACTTCAGAAGAGAAAGATGGATTACCTCAAAATATTCCAGAGGGCACAGAACCTCAGTCATCACCTTCCACCAAGACAGACCAGGTAGCCAAAACCACATCTCCACCCAAGACCGAGAGCAAGGCTGTGGCTCAGGACGAGAACGCTTCCCTTGCCTCGGTACTGGCAGAACTCAAAGATCTCCGCATGGCCCTGAATCTCCTCAAAACTCAGCACGAGAGAGACATAAAGGAGCTGAAAGATGAACTGAAGGATGAGACAGAAAAACGAACAAGATTACAGgATGAGGTGGAGGCTCTGAGGAAAAGACAGTAGGAGTATTTCACTACCCCAGTGATTCTTCTCTGGGACATGGACGGCATGGAGGCTACAGAATGACAATGTCGGGGGAATGGAAATCCCGCACATGTGACTGATCGATTGATGAAATCCTGGTTGAGTGGTCCAGAAGCCAGAGCTTAATTCAGAAAGCAGAACTACAAAAGACTAATGGCTTTCTCATACACTGCTTATCAGCTCATTAGGTTTTGGGAGTCCAAGGCACTCCTTTCTTAAGACATATGTGTAAATATCAGATATCCAATatctcatgtttttttaatgaaattcagGGATAATGTAAGGTCATATTTTAAGGTATTAACCCACgttctattaatatatttctgttttgtggTTGTATTCTGtaacaaatcaataaattgtTCCACTTGTTTTTGCTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171308 lncRNA upstream 117184 24890275 ~ 24890562 (+) True G116048
TU171303 lncRNA upstream 121391 24885714 ~ 24886355 (+) True G116043
TU171299 lncRNA upstream 162616 24843422 ~ 24845130 (+) True G116039
TU171285 lncRNA upstream 170829 24836115 ~ 24836917 (+) False G116029
TU171284 lncRNA upstream 170882 24835971 ~ 24836864 (+) True G116029
TU171347 lncRNA downstream 47949 25067398 ~ 25070377 (+) True G116072
TU171367 lncRNA downstream 65573 25085022 ~ 25085365 (+) True G116082
TU171401 lncRNA downstream 272762 25292211 ~ 25323742 (+) True G116101
TU171422 lncRNA downstream 286312 25305761 ~ 25308931 (+) True G116120
TU171446 lncRNA downstream 681767 25701216 ~ 25701429 (+) True G116136
XM_043260432.1 mRNA upstream 447 24968186 ~ 25007299 (+) False thrap3a
XM_043260433.1 mRNA upstream 447 24990680 ~ 25007299 (+) False thrap3a
XM_043260431.1 mRNA upstream 447 24990681 ~ 25007299 (+) True thrap3a
XM_043260434.1 mRNA upstream 447 24998098 ~ 25007299 (+) False thrap3a
XM_043261152.1 mRNA upstream 42510 24945236 ~ 24965236 (+) True map7d1a
XM_043261649.1 mRNA downstream 73732 25093181 ~ 25106459 (+) True sh3bp5b
XM_043260115.1 mRNA downstream 117487 25136936 ~ 25161646 (+) False col6a4a
XM_043260114.1 mRNA downstream 118150 25137599 ~ 25161646 (+) True col6a4a
XM_043260120.1 mRNA downstream 153126 25172575 ~ 25177859 (+) True decr1
XM_043261196.1 mRNA downstream 186847 25206296 ~ 25213787 (+) True LOC122360523
TU170450 other upstream 1753180 23251382 ~ 23254566 (+) True G115449
XR_006252835.1 other upstream 1784015 23222057 ~ 23223731 (+) False rps9
XR_006252766.1 other upstream 1841467 23164566 ~ 23166279 (+) False wnt4b
TU170363 other upstream 1895580 23110283 ~ 23112166 (+) False LOC122360203
TU170371 other upstream 2037220 22964569 ~ 22970526 (+) False LOC122360067
TU171398 other downstream 533414 25552863 ~ 25554807 (+) True G116099
TU171463 other downstream 699071 25718520 ~ 25778407 (+) False G116141
TU171760 other downstream 1193362 26212811 ~ 26215779 (+) False hmgn2
TU171761 other downstream 1193362 26212811 ~ 26215779 (+) False hmgn2
TU171947 other downstream 1821931 26841380 ~ 26842025 (+) True G116445

Expression Profile