RNA id: XM_043260120.1


Basic Information

Item Value
RNA id XM_043260120.1
length 1475
RNA type mRNA
GC content 0.43
exon number 10
gene id decr1
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 25172575 ~ 25177859 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAGTTGTAGAGTCGTTTTAATGCGTCAGAGGCGTAACCGAGTACGACTTTGCAAGTTTATTTGCATGTTGTGAAATTTTAAAACGCGCTTtctcactgtaaaaaatatttatttcgaGGCAATGGCGCTGCTCAGAGGATTGACTGTGTTAAATAGAGTTTCTCCAAACAGCTGCTTCATGACAGCACGACTTTTTGGAAATGGGACAAACACTTTATACCAGACCGATCCTCCCCACGCTAGATTCTTCCCACCTTCTGAAGGTGCTATGCTTCTCCCAGGAACTTACAAAAACAAAGTGGCCTTCATCACCGGAGGAGGAACAGGACTTGGAAAAGCCATGACCACCACTCTGTCTTCACTTGGAGCAGAGTGCATGATAGCCAGCAGAAATCTTGATGTTTTGAAGAAGACAGCAGATGAAATCTCACAGCAGACAGGAAACAAGGTTCATGCCGTCCAGTGTAATGTTAGAGACCCTGCATCAGTGGAGGCTGCTGTCGATCGACTTGTAAATGATGTCGGCTTGCCTGATGTGGTGATAAACAATGCTGCTGGAAACTTCATCTCTCCTTCAGAGAATCTCTCTCCCAATGCCTGGAGAACCATCACTGACATAGTGCTGAACGGCACTGCATATGTCACTCTAGAAATCGGGAAACGCCTCATCAAAGCTGAGAAagGTGCTGCTTTTCTGGCCATCACCACAATCTATGCTGAGAGTGGCTCAGGATTTGTTGTGCCAAGTGCTGCTGCTAAAGCTGGAGTGGACAAGCTTTGCACGTCTCTGGCAGCAGAATGGGGAAGATATGGCATGAGATTCAACGTTATTCAACCAGGACCCATCAAAACCAAGGGCGCCTTTAGCAGACTGGATCCCATCGGTACATTTGAGCAGGTGTTGTTAGAGAATGTAGCCGTGGGTCGTCTGGGAACTCCTGGAGAGATCGCCAACCTTGCTGCCTACCTCTGCAGCGATTATGCCAGCTGGGTTTCAGGCGCGATCATTCGAATGGATGGCGGTGAATATGTCTCGCTAGCTGGCGAGTTTAATGGCATGAAAGcggTCACAAAGGAGCAATGGGCCATAATGGAGGCAAAAATCAGAAATACAAAAGGATCATAAACCTCTGCGGTACTGTGGTAATTTGGCACCAGATTTCATTCTCCCATTGTAACACAGAGGATCAACTATTTTGAAACATGATTGtgtaaattgtgatttaaattgTCTTGGCACACAAAAATGTTCAtccatttgatgtttttaagcTGTGCCAAATTTTTGACCAGTCTGCCATTTCTGCCTTAACTATCCATTGTAACAATGGTtacaattacattaattatGCTGTAAACTTGAAAGGTTGCCTTTTTAGTAGGTATGATTGTTTGGTATACATTAACTTGTTTCATGCTTAGAAAtgaattcagtaaaaaaaaaaaaaaaaaaatatatatatatatatatata

Function

GO: NA

KEGG:

id description
K13236 DECR1; 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing], mitochondrial

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171367 lncRNA upstream 87210 25085022 ~ 25085365 (+) True G116082
TU171347 lncRNA upstream 102198 25067398 ~ 25070377 (+) True G116072
TU171308 lncRNA upstream 282013 24890275 ~ 24890562 (+) True G116048
TU171303 lncRNA upstream 286220 24885714 ~ 24886355 (+) True G116043
TU171299 lncRNA upstream 327445 24843422 ~ 24845130 (+) True G116039
TU171401 lncRNA downstream 114352 25292211 ~ 25323742 (+) True G116101
TU171422 lncRNA downstream 127902 25305761 ~ 25308931 (+) True G116120
TU171446 lncRNA downstream 523357 25701216 ~ 25701429 (+) True G116136
TU171447 lncRNA downstream 523624 25701483 ~ 25702533 (+) True G116137
TU171471 lncRNA downstream 553327 25731186 ~ 25731651 (+) True G116143
XM_043260115.1 mRNA upstream 10929 25136936 ~ 25161646 (+) False col6a4a
XM_043260114.1 mRNA upstream 10929 25137599 ~ 25161646 (+) True col6a4a
XM_043261649.1 mRNA upstream 66116 25093181 ~ 25106459 (+) True sh3bp5b
XM_043260435.1 mRNA upstream 153126 25007746 ~ 25019449 (+) True sh3d21
XM_043260437.1 mRNA upstream 153126 25007746 ~ 25019449 (+) False sh3d21
XM_043261196.1 mRNA downstream 28437 25206296 ~ 25213787 (+) True LOC122360523
XM_043261197.1 mRNA downstream 28437 25206296 ~ 25213787 (+) False LOC122360523
XM_043260407.1 mRNA downstream 122400 25300259 ~ 25312298 (+) True efhb
XM_043262097.1 mRNA downstream 497851 25675710 ~ 25698512 (+) True ube2e2
XM_043262095.1 mRNA downstream 526004 25703863 ~ 25712116 (+) False nr1d2a
TU171329 other upstream 115407 25003262 ~ 25057168 (+) True G116057
TU170450 other upstream 1918009 23251382 ~ 23254566 (+) True G115449
XR_006252835.1 other upstream 1948844 23222057 ~ 23223731 (+) False rps9
XR_006252766.1 other upstream 2006296 23164566 ~ 23166279 (+) False wnt4b
TU170363 other upstream 2060409 23110283 ~ 23112166 (+) False LOC122360203
TU171398 other downstream 375004 25552863 ~ 25554807 (+) True G116099
TU171463 other downstream 540661 25718520 ~ 25778407 (+) False G116141
TU171760 other downstream 1034952 26212811 ~ 26215779 (+) False hmgn2
TU171761 other downstream 1034952 26212811 ~ 26215779 (+) False hmgn2
TU171947 other downstream 1663521 26841380 ~ 26842025 (+) True G116445

Expression Profile