RNA id: XM_043262095.1


Basic Information

Item Value
RNA id XM_043262095.1
length 2652
RNA type mRNA
GC content 0.54
exon number 8
gene id nr1d2a
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 25703863 ~ 25712116 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTGTGAGAGAGACGCTCGAGAGCATCTATGGAACGCTGAAGCGTCCGAACGCAACACCGGATCCGAGCTGCTCGACAGACCTACAACTCACGAGAGAAGCTGTCGACCTGGACTTATTACAGGAGACATCGAGAGCCTGAAGACATGGAATCAGCGAAGCAAGGAGGCGTGATAGCCTACGTCTGCTCCTCGAGCTCCGCCCCCAGCCCGGAGTCCTGCATGAGTGACAGCTCTAACAGCCGCTCCCCGTCGTCCTCCCCGCCTCTGCCCATTAAAGCGAGCCGTCTGACAGACCTGCCCACCGCCGCACTGCTGTCCAAACACCCACGAGGACACGCTTCTGACAAGACCCCCGCTGCCAAGAGCAGCATCACCAAGCTCAACGGGATGGTGCTGCTGTGTAAAGTGTGCGGAGACGTCGCCTCGGGCTTCCACTACGGCGTTCATGCCTGTGAAGGCTGCAAGGGCTTCTTCAGAAGAAGCATCCAGCAGAATATTCAGTATAAGAAATGCTTGAAGACGGAAAGCTGCACTATCGTACGGATAAACCGCAACCGCTGCCAGCAGTGCCGCTTCAAGAAGTGTTTATCGGTCGGGATGTCCCGAGACGCCGTGCGTTTCGGACGCATCCCGGAGCGTGAGAAGCAGCGGATGCTCCTGGAGATGCAGACAGCCATGAACAACATGATGAACAACAGCCAGCTGCAGAGCATGCTTCACAGCGACTCCAGCTCGTCCTCGCCCTCGCCGCCCGATTCCCCCCGCTCCTCCTCCGATCTGTCCCGAGACTCGGAGTCGGCCGTCCCCATGGACACGGCCTCGTCCTGCTCGTCCGACAGCGGGGAGGAAGACGCGGCGAGCTCCGGACGCGGCCCGCTCGGGTACGGCTCCGTGTCTCCGGCCGGCTCCGAGACGCTCGGCAGCTGCGGTAATAAGGAGGACGAGGAGCCGCGGGAAACCTGGAGCCGCTGGAACGAGAGAAACCCGGTCGCCGAAAACAACGTGAAGACCACCGCCGGACCTTACAGGGAACACGTGACCGGGTATCACCTGACCCAGCAGTGCCGTCGAAGCCCACAAAACCTGCCTCAGCACACAAACAACATGAACGAAGTCCAGGCTGGAGCAAACAGGGGACACCTGGTGTGTCCCATGAGCGTTTCCCCCTTCGTGGACCCCTGCAAGCCCGGTCACGAAATCTGGGAGGAGTTTTCCAAGAGCTTCATCCCTGCCGTACGAGAAGTGGTGGAATTTGCCAAGCGGATCCCGGGCTTCCAGGACCTCTCCCAACACGACCAGGTCAACCTCCTCAAGGCGGGAACCTTCGAGGTGCTGATGGTGCGCTTCGTGCCGTTGTTCGATGTGAAAGAGCGGACCGTGACGTTCCAGAGCGGCAGGAAGTACAGCGTGGACCTGCTGCGCTCGATGGGCGCCGGAGAGCTGCTCAACTGCATGTTCGAGTTCAGCGAGAAGCTCACCGCCCTGCAGCTCAACGAGGAGGAGATGAGACTCTTCTCCGCCGTGGTGCTGGTGTCTGCAGacCGATCGGCAATCGAGGACGTAAGCGGCGTGGAGGCCCTGCAGGAGACCCTGATCAGAGCCCTGAGGAACCTGATCATGAAGAACCACTCGAACGAAGCGGCCGTCTTCACCAAGCTGCTGCTGAAGCTGCCCGAGCTGCGTTCGCTCAACAACATGCACTCCGAGGAGCTGCTCGCCTTCAAAATCCAACCTTAACCCCCGTCTGACCGGCCCGGGGCTGTAAATTAACTCTCGAATGTATTtaacaggcttttttttttgtaccaatTTGTGATTGAGAGACGCGTTCGGAAGCGTTCGggttttaaaactatattacaGATCGTTGTTATTTGCTCATCACGCACAAGCAAAGGTCGTCTGCGTTTCGCATTCGTTTGTAAAACACCAGACTCTTCCTCAGCCGCGTATCATCCTTCCATTACGTGCAATAGCTGCTAACGCATGGCTATTCGTATCCGAGCAGCTTTATGTCGTATcttatgtactttttttcctGAATGTATGTCTGTTGCTAGCAGCATGTTGGCGTCATTTGAACCTGTATGACAGGGGCAACGCTTTTGCACGAGGTGTTGAGGAACATAATAACACCATAATAACGGTGCCGAGTTGTAATTTATGAGTGGAGTCACTTTAAATGGCGTTTTTCTATAGACCACGTACAGAGAGGTGTTATTAGTCTTCCATTATGCAGCGGGAAACATGTATAGTGGACTTGAACAAAACTATGAAAGAGACGGAGTTTATTTATGGACGTTTGTACAGATTGCCTTATCACTTTTCGCCAGATTGACGGACGCGGGgaacatttgttgtttttcttctctgtaaTCATCGCGGAGCAGGGAAACGGTGTTAAAATCCCAGTTATTTTGGGACGCGCTGCTCCCGGTTTACTCTATGCATATGGAAACAGCTCGACAACACGGACATTTCTCAGCCTGCGACACGCAGGAAAAGACGTACCGCTCTCTCGTTCGGCTCTGGTGtgtccatgttttttttgtttccttatACAAAACAGTGCAGTATGTATAGTTGTGTATatctatttgaaatatatcattataaaaaaaaaaaatcaataaatatttacttgtcATTTA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171447 lncRNA upstream 1330 25701483 ~ 25702533 (+) True G116137
TU171446 lncRNA upstream 2434 25701216 ~ 25701429 (+) True G116136
TU171401 lncRNA upstream 380121 25292211 ~ 25323742 (+) True G116101
TU171422 lncRNA upstream 394932 25305761 ~ 25308931 (+) True G116120
TU171367 lncRNA upstream 618498 25085022 ~ 25085365 (+) True G116082
TU171471 lncRNA downstream 19070 25731186 ~ 25731651 (+) True G116143
TU171468 lncRNA downstream 50455 25762571 ~ 25769596 (+) True G116141
TU171460 lncRNA downstream 55449 25767565 ~ 25778407 (+) False G116141
TU171466 lncRNA downstream 63807 25775923 ~ 25778407 (+) False G116141
XR_006252831.1 lncRNA downstream 69906 25782022 ~ 25788678 (+) True LOC122360700
XM_043262097.1 mRNA upstream 5351 25675710 ~ 25698512 (+) True ube2e2
XM_043260407.1 mRNA upstream 391565 25300259 ~ 25312298 (+) True efhb
XM_043261196.1 mRNA upstream 490076 25206296 ~ 25213787 (+) True LOC122360523
XM_043261197.1 mRNA upstream 490076 25206296 ~ 25213787 (+) False LOC122360523
XM_043260120.1 mRNA upstream 526004 25172575 ~ 25177859 (+) True decr1
XM_043261545.1 mRNA downstream 40149 25752265 ~ 25774002 (+) True LOC122360719
XM_043261543.1 mRNA downstream 40149 25752265 ~ 25774002 (+) False LOC122360719
XM_043261542.1 mRNA downstream 40149 25752265 ~ 25769606 (+) False LOC122360719
XM_043261541.1 mRNA downstream 40149 25752265 ~ 25769606 (+) False LOC122360719
XM_043261544.1 mRNA downstream 40149 25752265 ~ 25769606 (+) False LOC122360719
TU171398 other upstream 149056 25552863 ~ 25554807 (+) True G116099
TU171329 other upstream 646695 25003262 ~ 25057168 (+) True G116057
TU170450 other upstream 2449297 23251382 ~ 23254566 (+) True G115449
XR_006252835.1 other upstream 2480132 23222057 ~ 23223731 (+) False rps9
XR_006252766.1 other upstream 2537584 23164566 ~ 23166279 (+) False wnt4b
TU171463 other downstream 6404 25718520 ~ 25778407 (+) False G116141
TU171760 other downstream 500695 26212811 ~ 26215779 (+) False hmgn2
TU171761 other downstream 500695 26212811 ~ 26215779 (+) False hmgn2
TU171947 other downstream 1129264 26841380 ~ 26842025 (+) True G116445
TU171967 other downstream 1183322 26895438 ~ 27171468 (+) True G116459

Expression Profile