RNA id: XM_043260709.1


Basic Information

Item Value
RNA id XM_043260709.1
length 3940
RNA type mRNA
GC content 0.47
exon number 13
gene id cep85
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 20687866 ~ 20699849 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGGTTGAAAAAAAGCGTCCCGAGTTTCAGTGGCGGCGCGGCGGGTGTTTGAAGCTCGAGGCCGCTTATAGTCTGACTGTTATCGGTGTTAGCATCCAGTCAGCGTCTCTCGGGTAATGAAGCGCATTATTGTTCCTCTGTGTTGTGTTCGCGTCGCGGTTATCTTTAGCACAGACCCTTTCAGCCCGTGAGTTGAGGTGACCACAGGAATGACCACTTCACAAAAATACCACAACCCCAAACTTGCAGGACACTCTGACACGGAATGGCTGACACCTGCTGTGTCTGAGAAGTTCCAGAGTCGCTTTGGATGGCGGCCCAACACGCTGGACGGTGGGGACACGGGCCTGGGTAACTCTGACCACACTGAAGATATCTGCAGCACTAGCAGCAGTCCATCTTTCCAGCCCATCCGCAGTCAGATTCCCATTCCCACCGCTCATGTCATGCCCTCTACGGCTGGAACTCTGGCCTCCAAGCTCAAGCCGCGTGCTTCTGAAGAGGCCCGGGGgtcctccagctcttccagtTCCAAGTCGTCCCTCCCCAAATCTGCATCCTCCCCCAACCTGGACGCTCAGCATGATGGAAATTTAGACACGACTTCGGTCAAGCCTGATTGCCTGAGCCGATACCGAAGCCTGGTTAATGGCCTCGATCACTCGCTCTTTCCCTCTGGCGATCAGACGCGGCTGGATGAAGCCCAGAAGTTTGAGGTACCTACCATGGAGCCAACGCTTAATCAGTCGGCTCTGCTCGGGGGACTTTGCCATGATGTACGGCAACAGCTGCAAATGACCGGGCTTGGGGACAATACAGGCTTGCTGGAACAGACATATAAAGTCCTACCAGAGGCTAGGGCAGGTCTTACCTGTCCCGTAGACCCATACGGCCAGAGAAACGTTCATCCAGGGTCTGGAGCCTCTGCCAGGATGTTTTCCGTACCTCAGGGCCTGCAGACTCAGGCTCTCCTGAGAGACCAGACATGCTCTGGAGGTTATGATCCACTGCCGCAGGAACGCTGTGGTGAGCTGGCCAGCTggcagcagcagaagcagaaacTCGAGAGTCTGCGGCTACAGGTGGAGCAAATGCAGTTAATGACAGGAGGAAGTGGACAGTATTCATCTCTTTATCCAACAGCCTCTCACATCGAGAGCAGCAAGTGGGATGCTGTCATTAAAGCCAATGAAAACTTGCTAAAAGAGAAAGAACTTACCATTGAAAGGCAGAAGCAGCAAATGTCTCAGCTGGAACAGCGTCTCAGAGAGAGTGAGTTGCAGGTGCACAGTGCGCTCATGGGACGTGGAGCCCCTTACACTGATGTGTGTCTGTTGAGGCTGCAGGAAGCTCAGCgggaaaatgcttttttgcgAGCCCAGTTCGCCGAACGTAACGACTGCTTTACCAAGGAGAAGCTAGAAGCGGACCGGAGGCTGGGTGCAGTGGAAGCAGAGACGCAACGTCTGAACGAGGTCTTGAAAGAGAGCAGTGAAAAACATGCAGAAGAGCTAAAGAAACAAGAGGAAAGGATCCGAAGTCGAGACAAGCATATCAGCAGCTTGAAGAAGAAGTGTCAGAAGGAGTCGGAgcagaacagagaaaaacagcagcgAATTGAGACGCTCGAACGATATCTGGCTGACCTTCCCACCATGGAGGACTACCAGGCCCAGCACAAAAAGctggaggaggcagaggaAAGAACAGCTTTGTTGCAGGCCACCATCAGAGATCTGGAAGCCAATTTGGAGGAGGCCCGCAGTGCTGTGCGCAACAAAGAGACCCAACTGGAAGAACAGAGACACAGGGAGAGAGAACTGCTCACAACAGTcaccagTCTCCAGAACAGAGTGCAGGAGAGCCTTGAGGATGGAGTGAGATTGCCTTCTCTCGACGTAGAGAAACTACGAGAAGAAAACACTACCATGAAAGAGGAGCACCAGCGACTAAAAAAGGTCATTGAAAAGCAACTCAGGATAATGGAGCAGCTCGGCTCACAGATCAGGACTCTAGAGGAGCAGCTGTCTCAGGAGGAGTGTAGTAGCCAGGCCCTGCGAGAGGAAGTGGCAGAGAAAGAGGAGAGTCTGCTGCAGTTACACATTGCTATGAAAGAGcTCTCAGCACAGAACCAGGAGCTGATGGAACATAATCTGACACTGCAAGAGCGTCTTCAGGGCGAGGAAGCGCCAAGCGGCCATAGTTTGCTCCCTATGGGAGCCCGGCTCACCCAGAAGCTGTATGGAGAGATGGCCGCCTGTCTGTGTGATCTCCGATCGCTCTGCAACGTCCTCACCCAGCGGGCACAGGGCCATGACCCAAACCTTTCCATGCTGCTCGGCATTGCTTCTGCTCCCCCTCCAGTAGGAGAGCAGTGGGAGGACTGGCTGAGCCCTGAAGGGTTGCAGAAGAAGCTGCAGGAAGCTCAGCAGCTCCGTCGAGACGTCGAGGAACTGAGAACCACAGTCTCTGACCGCTACGCTCAGGATATGGGAGAAAACTGCATCACTCAGTGACCTCAGACGGTGCGGCTTGTGCTCAGTGAGGGTAACTCCACATCACCAGTGCCTTTGAAGACACTACAATCTCTAGCAACACAAACCTTCTTCATGAAGGATTAGCGACACTAAGGACACTGTAATCTCGCAATCCAGAGGGCTATTTTTATACATAAGATATTTTTCTAAGGTTTCAGTGACTTTGTATGCAGTGGAAAGATAATGGTTTAATATAAATCTTTCCATGTATTTGGGAACGTCTGTGATGAAGTTGATAatcaactgaaaatatttaagcTTTTGTTGAAACTAACATGCTTTGTGTTTCTTACAATGGCAAAGCGAGCGACGCTCTGTTGTGTGTAAAAAGAAGATATTCACTGGTATCCATCATAAGCATGCCACATTAAACACAGAATCTAGGACCGAGGAAATAATTGGCCAACTCTGgctgtttaaaaatgacaccAGCTGATCATCTGTGTATAAAGTTGGAGAATATACATTCCCTAATATTATATAACAACCGTAATTCAGCGTGATCACAGATAGACCTATCAGAACAGCTTCCGTAATTCGTTAAAGAGTCTTGGTGTACGCTGTATTATGCAGACCAATAAATGGGGACTTTTTAAAGCAAGAGAGGGCtgtaaacataatattaaattctgttaaataaaaaaattaatagaatgCTGTTTGAGTTTAGGATCTCTTAATTGCAGACTAACGGTGATCATATCAGTATTTTCAAAGGCATCTTGAGAATCTTACGACATTATAAGGTTCTTTCTTGCTGCAAAATTAACACActaaaaattgtattctttttggGTCACACAATTGAACTGGTGATGTTTGCTTGTGTTTGAGTGTTGGGAGTATTGAGGGGCAGGATTGTCTTAGCAGTATATGATGTACTCGTATCCATGACGTATTTGCTGTCTGGttcataatttgttttttatcagctataAAAATAGCCACGCCACTGAATCAACACATCAGAGGAAACCAACTGGTGAAGCAAATATTGTATTAGTGCATATCAAACATTAGAGCAGGTGCCTTGCGTTCAGGGAAGTATATTTGCCTCACAACATGTCAATGTAAACACTAATTGTCTTTCTCTACTGTAATGTTTGACTGTTGAGACATTGGGATTCTATCAGAAAAAGGGACCATATATTGTGGGGAGTGTTTTATTGGTAAATTGAGATATTATGGTCCAGAAACATCACTAACAAGTGTGAATGTAATTTGACAATGCAGCAAATcccctttttatatatataatgtaacatcTCATTTATGTTTAACAGAAAACAGCCAGGCAAACCTTACGCCAAAAACCTTCTAACAACACTAAAtgttcattatatataaatttgtctTAAGCTGTTTCAGTTTTTAGAAATAAAGCTTTGTATTTCATATGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169531 lncRNA upstream 49234 20637446 ~ 20638640 (+) True G114826
TU169514 lncRNA upstream 101047 20586060 ~ 20586827 (+) True G114813
XR_006252845.1 lncRNA upstream 265685 20414210 ~ 20422189 (+) True LOC122360972
TU169353 lncRNA upstream 265698 20414657 ~ 20422176 (+) False LOC122360972
TU169352 lncRNA upstream 273985 20413557 ~ 20413889 (+) True G114707
TU169573 lncRNA downstream 67429 20767278 ~ 20767920 (+) False siglec15l
XR_006252804.1 lncRNA downstream 228853 20928702 ~ 20929441 (+) True LOC122360417
TU169773 lncRNA downstream 418300 21118149 ~ 21120532 (+) True G114978
XR_006252821.1 lncRNA downstream 429279 21129128 ~ 21132105 (+) False LOC122360615
TU169784 lncRNA downstream 429428 21129277 ~ 21132102 (+) True LOC122360615
XM_043260714.1 mRNA upstream 7673 20661662 ~ 20680201 (+) True si:dkey-199f5.8
XM_043260664.1 mRNA upstream 28085 20654160 ~ 20659789 (+) True psmc4
XM_043260877.1 mRNA upstream 52485 20611121 ~ 20635389 (+) False gramd1a
XM_043260705.1 mRNA downstream 7177 20707026 ~ 20737160 (+) True atp2c1
XM_043260712.1 mRNA downstream 41969 20741818 ~ 20746979 (+) True LOC122360262
XM_043261707.1 mRNA downstream 47482 20747331 ~ 20751315 (+) True LOC122360859
XM_043261509.1 mRNA downstream 51924 20751773 ~ 20755366 (+) True LOC122360694
XM_043261991.1 mRNA downstream 57146 20756995 ~ 20759232 (+) False rpp25l
XR_006252832.1 other upstream 460797 20219644 ~ 20227077 (+) False hjv
TU169046 other upstream 1040068 19645958 ~ 19647806 (+) False LOC122360533
TU168846 other upstream 1359111 19327104 ~ 19328763 (+) True G114382
TU168814 other upstream 1434828 19197804 ~ 19253046 (+) True G114352
TU168594 other upstream 1847646 18827254 ~ 18840228 (+) False LOC122360132
unassigned_transcript_2160 other downstream 439032 21138881 ~ 21138952 (+) True trnae-cuc_37
XR_006252812.1 other downstream 1150140 21849989 ~ 21872972 (+) False tgfbr2b
TU170042 other downstream 1184080 21883929 ~ 21894532 (+) False stt3b
TU170081 other downstream 1277268 21977117 ~ 21979368 (+) True G115193
TU170321 other downstream 2209712 22909561 ~ 22911076 (+) False LOC122359863

Expression Profile