RNA id: TU187698


Basic Information

Item Value
RNA id TU187698
length 583
RNA type TUCP
GC content 0.44
exon number 2
gene id G127098
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 17410685 ~ 17411593 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATCgcgatgcattttttaaataatctaggAATCGATTCACGAATCgcgatgcattttttaaataaatctaggAATCGATTCACGAATCgcgatgcatttttaaataatctcgGAATCGATTCACGAATCgcgatgcattttttaaataatctcgGAATCGATTCACGAATCgcgatgcattttttaaataatctaggAATCGATTCACGAATCgcgatgcattttttaaataatctaggAATCGATTCACGAATCgcgatgcatttttaataaatctctgAATCGATTCACAAATCGCGATGCATCAATTCTTTGTCCCGGCCCTAATAAAGATCATGTAAGCATAAGTGTAATACGACGTGTACTCCACGATGAAAGGCAGCCGCAGAGCGTAGAGCGCTCAGATGTTGGTCAGGACGTCGCTGGTAGTGAGGCTGACCGACACCACACCTGGAAGTTCGTTGTTCTGCCGGTTGGCTTTGTCCCGCAGGCGGAGCGTGTGAAGCTGCTGCAGGTCGGACAGATCGCCGCTCAGGACCGCCTGACCCATGAACGAGTCTTTCAGGAGGTTCTTGTTGTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187411 lncRNA upstream 132281 17278206 ~ 17278585 (+) True G126906
TU187407 lncRNA upstream 153503 17256811 ~ 17257363 (+) True G126903
TU187393 lncRNA upstream 238561 17172005 ~ 17172305 (+) True G126893
XR_006253132.1 lncRNA upstream 239882 17129970 ~ 17170984 (+) False LOC122362575
TU187705 lncRNA downstream 33368 17444961 ~ 17446064 (+) True G127103
TU187713 lncRNA downstream 37878 17449471 ~ 17449801 (+) True G127110
TU187716 lncRNA downstream 42590 17454183 ~ 17455646 (+) False serp1
XR_006246930.1 lncRNA downstream 104066 17515659 ~ 17520724 (+) True LOC122322999
TU187720 lncRNA downstream 104213 17515806 ~ 17519391 (+) False LOC122322999
XM_043264317.1 mRNA upstream 56018 17325966 ~ 17354848 (+) True unc13c
XM_043216503.1 mRNA upstream 104821 17303769 ~ 17306045 (+) True LOC122322904
XM_043264794.1 mRNA upstream 311304 17079059 ~ 17099562 (+) True LOC122362967
XM_043264314.1 mRNA upstream 341047 17067094 ~ 17069819 (+) True LOC122362752
XM_043264852.1 mRNA upstream 439502 16958824 ~ 16971364 (+) True LOC122363001
XM_043216683.1 mRNA downstream 13561 17425154 ~ 17425977 (+) True ompa
XM_043216533.1 mRNA downstream 25558 17437151 ~ 17440065 (+) True LOC122322924
XM_043216880.1 mRNA downstream 42561 17454154 ~ 17455657 (+) True serp1
XM_043216871.1 mRNA downstream 45497 17457090 ~ 17478956 (+) True lrch3
XM_043216873.1 mRNA downstream 45499 17457092 ~ 17482180 (+) False lrch3
TU187390 other upstream 101708 17303820 ~ 17309158 (+) False LOC122322904
TU187389 other upstream 104892 17303820 ~ 17305974 (+) False LOC122322904
TU187377 other upstream 246109 17129922 ~ 17164757 (+) False LOC122362575
TU187380 other upstream 246109 17129922 ~ 17164757 (+) False LOC122362575
TU187381 other upstream 333707 17074194 ~ 17077159 (+) True G126884
TU187881 other downstream 397081 17808674 ~ 17812167 (+) False G127239
XR_006253166.1 other downstream 472072 17883665 ~ 17887211 (+) True sdr42e1
TU187918 other downstream 511335 17922928 ~ 17928165 (+) True G127258
TU187919 other downstream 514507 17926100 ~ 17928165 (+) False G127258
TU187968 other downstream 726942 18138535 ~ 18140253 (+) True G127292

Expression Profile