RNA id: TU187831


Basic Information

Item Value
RNA id TU187831
length 786
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G127207
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 17749391 ~ 17750176 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttgttgttgtttcaaatAGAGTATTCAGTATTTGGCACAAAAGACAGTGTTTGGCAGTGATACAGTGTTTTACGGGCGCTACAGCAGAATAAAGCACTCTGTAAACCACACCGGAACGTCCCACAGATCGCGAACATTCACTCAGGATTCGTTCGCGTCGCTTTCGTGAAATGGAGGGACCGGAAAAAGAGAGGAAACGAACGCTTGTGAGGGCGCTTTGCAACCGgttttgagaaaagaaaaaaaattacagcaatTTACCGTAAAGAGGCGGGCGTTTCATCTAAACCTCATTCAGAGTCCTGAGATTAAATGAAACCGGCAGGAAATCGTGAACCAGAGACCAGagatacgaaaaaaaaaaatccacaaccAACTGCTGAAGGTCTACACAAACGTACGATACAAATCAACCGCTAACCTACGTGGGAATACAGGAACAGCTAAATACTCATTTAATTGGACAGCTACATGACTACAGATAACATAGCAACAcgtttaaaagtgttaaaagagGTTAAAAAAGTGGCATAGGAGCGAGTGCTTTCCTCCGTCGGTCCACTAGAGAGGGACAACAGCACACGTTATGACGGGAACAGACCGTGCTCATCTACAGAGATCtatcagttttatttagaaTGGGTTTCTTAAGGTGGGAAATGATGCTTTTAagatattaagcaaagatccataaaggcattttaaataaatctaaacttaatttctgattagttATATGCATTGCTAACTTCATATAGGGCAACTTTAAAAGGCCATTTtatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187819 lncRNA upstream 53798 17695334 ~ 17695593 (+) True G127195
XR_006246945.1 lncRNA upstream 221461 17521624 ~ 17527930 (+) True LOC122323095
XR_006246930.1 lncRNA upstream 228667 17515659 ~ 17520724 (+) True LOC122322999
TU187720 lncRNA upstream 230000 17515806 ~ 17519391 (+) False LOC122322999
TU187716 lncRNA upstream 293745 17454183 ~ 17455646 (+) False serp1
TU187834 lncRNA downstream 176 17750352 ~ 17751182 (+) False G127208
TU187835 lncRNA downstream 201 17750377 ~ 17751251 (+) True G127208
TU187867 lncRNA downstream 32422 17782598 ~ 17783703 (+) True G127228
TU187873 lncRNA downstream 44685 17794861 ~ 17933819 (+) False G127233
TU187887 lncRNA downstream 58425 17808601 ~ 17814422 (+) False G127239
XM_043264911.1 mRNA upstream 56157 17555210 ~ 17693234 (+) True LOC122363047
XM_043264912.1 mRNA upstream 56157 17555211 ~ 17693234 (+) False LOC122363047
XM_043264179.1 mRNA upstream 248874 17498529 ~ 17500517 (+) True LOC122362636
XM_043216873.1 mRNA upstream 267211 17457092 ~ 17482180 (+) False lrch3
XM_043216686.1 mRNA downstream 19482 17769658 ~ 17776977 (+) True pigb
XM_043216687.1 mRNA downstream 19595 17769771 ~ 17776977 (+) False pigb
XM_043264449.1 mRNA downstream 133442 17883618 ~ 17887207 (+) False sdr42e1
XM_043264448.1 mRNA downstream 133489 17883665 ~ 17887207 (+) False sdr42e1
XM_043264450.1 mRNA downstream 134185 17884361 ~ 17887207 (+) False sdr42e1
TU187698 other upstream 337798 17410866 ~ 17411593 (+) True G127098
TU187390 other upstream 440233 17303820 ~ 17309158 (+) False LOC122322904
TU187389 other upstream 443417 17303820 ~ 17305974 (+) False LOC122322904
TU187377 other upstream 584634 17129922 ~ 17164757 (+) False LOC122362575
TU187881 other downstream 58498 17808674 ~ 17812167 (+) False G127239
XR_006253166.1 other downstream 133489 17883665 ~ 17887211 (+) True sdr42e1
TU187918 other downstream 172752 17922928 ~ 17928165 (+) True G127258
TU187919 other downstream 175924 17926100 ~ 17928165 (+) False G127258
TU187968 other downstream 388359 18138535 ~ 18140253 (+) True G127292

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU269296 True 2079 lncRNA 0.36 2 CI01000054 12819695 ~ 12821913 (+)
tiger barb (Puntius tetrazona) TU269296 True 336 lncRNA 0.56 2 NW_025048028.1 749723 ~ 750078 (-)