RNA id: TU187835


Basic Information

Item Value
RNA id TU187835
length 828
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G127208
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 17750352 ~ 17751251 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ataaaattttcctcttttttttcccccccataGATTCCAGCTGTATTTCAACGAAATATCGTCTGCTCCCAACAAACCACACGTCAATGGAAAGCTCATCATTCAGCTTCCAGATGATTTATAAATCTCAAATCTCCAAATAAATGCTCCCTCGGGACCGGTCTCGGGGTCCAGGGTTATACATTTCCAACAAATATTTACCTGACAGCTAAATATCACGCCATTTCAAGCATTGtacaaatacagattttaaacaaatatttaaaaaactttcaGTGGTTGAACGTGGGGTTTTCGTAAACCGACACAAAACCGTGGGGATCGGAGAAAGGCActcgttttttttaaacagtgaaaCAGACATTCATTCTGATGCATTAAGGTTTCTGAACGCGGGGGGTTTGGTGTAAAGTGCTCTCAAAACGTGAAGACTTTGAATTTAGGAGGCTTTAGTTCATGCATTCTGAGAAAACGACCGACGCAGAGCAGGGTCTCCGGTCCCCGACATCCGCTCAGCCGAAGCGTGACGAAGGGGGTCGGAGAGCCTCGTCCGGGAGGATTCTTAGCAGCTGCACTTGCTCTGCTCGGCGTCTCGAGGCTCGCTCAGGTCGCTGCCGCTGTGGCCGTTGGCTCGAACCGTCCCGTCGGGGATCCAGGATTTGTCCACGCACTTCTCCATGCGCTTCATGATCAGATCCAGGAGAACCTCCACGGCGCGACTCACGTTCTCTCCGTTCGCGGCGCTCGTCTCGAAGTACGGGACACTGGCAGGAGGAGAAAAATACCACGGGTTAGAGCGCTTTTATTCATGTCGGTGCGCGCTTTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187831 lncRNA upstream 201 17749391 ~ 17750176 (+) True G127207
TU187819 lncRNA upstream 54784 17695334 ~ 17695593 (+) True G127195
XR_006246945.1 lncRNA upstream 222447 17521624 ~ 17527930 (+) True LOC122323095
XR_006246930.1 lncRNA upstream 229653 17515659 ~ 17520724 (+) True LOC122322999
TU187867 lncRNA downstream 31347 17782598 ~ 17783703 (+) True G127228
TU187873 lncRNA downstream 43610 17794861 ~ 17933819 (+) False G127233
TU187887 lncRNA downstream 57350 17808601 ~ 17814422 (+) False G127239
TU187882 lncRNA downstream 57423 17808674 ~ 17812167 (+) False G127239
TU187883 lncRNA downstream 57423 17808674 ~ 17814422 (+) False G127239
XM_043264911.1 mRNA upstream 57143 17555210 ~ 17693234 (+) True LOC122363047
XM_043264912.1 mRNA upstream 57143 17555211 ~ 17693234 (+) False LOC122363047
XM_043264179.1 mRNA upstream 249860 17498529 ~ 17500517 (+) True LOC122362636
XM_043216873.1 mRNA upstream 268197 17457092 ~ 17482180 (+) False lrch3
XM_043216686.1 mRNA downstream 18407 17769658 ~ 17776977 (+) True pigb
XM_043216687.1 mRNA downstream 18520 17769771 ~ 17776977 (+) False pigb
XM_043264449.1 mRNA downstream 132367 17883618 ~ 17887207 (+) False sdr42e1
XM_043264448.1 mRNA downstream 132414 17883665 ~ 17887207 (+) False sdr42e1
XM_043264450.1 mRNA downstream 133110 17884361 ~ 17887207 (+) False sdr42e1
TU187698 other upstream 338784 17410866 ~ 17411593 (+) True G127098
TU187390 other upstream 441219 17303820 ~ 17309158 (+) False LOC122322904
TU187389 other upstream 444403 17303820 ~ 17305974 (+) False LOC122322904
TU187377 other upstream 585620 17129922 ~ 17164757 (+) False LOC122362575
TU187881 other downstream 57423 17808674 ~ 17812167 (+) False G127239
XR_006253166.1 other downstream 132414 17883665 ~ 17887211 (+) True sdr42e1
TU187918 other downstream 171677 17922928 ~ 17928165 (+) True G127258
TU187919 other downstream 174849 17926100 ~ 17928165 (+) False G127258
TU187968 other downstream 387284 18138535 ~ 18140253 (+) True G127292

Expression Profile