RNA id: XM_043264179.1


Basic Information

Item Value
RNA id XM_043264179.1
length 732
RNA type mRNA
GC content 0.52
exon number 5
gene id LOC122362636
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 17498529 ~ 17500517 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGTGGTTAACCGATATCACGAATATTAATAGGGAAAATAAGATCAGACTCCCGATTGGCCGCCGCCGGAATTAGTCACGTgacaaagcatttaaaagaacaCGCACGACAATCACTGCCCAAAAACTTTGTGAACGCAATCGAGTCTGCATCCCCGAACACCATGAAGACCGTGGCTCTGTTTCtgcttctggctggacttctgGAGCATTCACGAGGCTGGGAGAACAGCTTCGACGGACCCCTGGACTTTAGCTGTCCTGCGGGCCACTCGATCTCCTCCGTAACCAGTGAAAACAGCAATTACCACGAGGACCGGCGCTGGGAGTTTGGCTGCCAGGCCACCTTCGGTCAGAGCGGAGAGTGTTACTGGACGAATTACGTCAATGACTTCGACCAACCGCTGCTCTTCGAGTGTCCGGCTGGATTCGTGATGGCGGGAACGAGCAGCTACCACAACAACAACTACGAGGACAGACGCTGGCGGTTCTACTGCTGTAAAAGCCCGTGTGTGACTACGAACTGCGACTGGACCTCGTACGTGAACGCCTTCGATGAGTTCTTCACCTGGACCGTGCCTTCCAGGAACGTTCTGGTGGGAGCTCAGAGCTACCATCAAAATCACGAAGAAGATCGCCGGTGGAGGTACAAGGTCTGTGTCCAGTACAGATGCTGATCCTGAGATTGTCTCACGGGGAATATTCTCTGAAATAAACGCAAACTAAAAAAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187716 lncRNA upstream 42883 17454183 ~ 17455646 (+) False serp1
TU187713 lncRNA upstream 48728 17449471 ~ 17449801 (+) True G127110
TU187705 lncRNA upstream 52465 17444961 ~ 17446064 (+) True G127103
TU187699 lncRNA upstream 86936 17410866 ~ 17411593 (+) False G127098
XR_006246930.1 lncRNA downstream 15142 17515659 ~ 17520724 (+) True LOC122322999
TU187720 lncRNA downstream 15289 17515806 ~ 17519391 (+) False LOC122322999
XR_006246945.1 lncRNA downstream 21107 17521624 ~ 17527930 (+) True LOC122323095
TU187819 lncRNA downstream 194817 17695334 ~ 17695593 (+) True G127195
TU187831 lncRNA downstream 248874 17749391 ~ 17750176 (+) True G127207
XM_043216873.1 mRNA upstream 16349 17457092 ~ 17482180 (+) False lrch3
XM_043216871.1 mRNA upstream 19573 17457090 ~ 17478956 (+) True lrch3
XM_043216872.1 mRNA upstream 19573 17457092 ~ 17478956 (+) False lrch3
XM_043216880.1 mRNA upstream 42872 17454154 ~ 17455657 (+) True serp1
XM_043216533.1 mRNA upstream 58464 17437151 ~ 17440065 (+) True LOC122322924
XM_043264911.1 mRNA downstream 54693 17555210 ~ 17693234 (+) True LOC122363047
XM_043264912.1 mRNA downstream 54694 17555211 ~ 17693234 (+) False LOC122363047
XM_043216686.1 mRNA downstream 269141 17769658 ~ 17776977 (+) True pigb
XM_043216687.1 mRNA downstream 269254 17769771 ~ 17776977 (+) False pigb
XM_043264449.1 mRNA downstream 383101 17883618 ~ 17887207 (+) False sdr42e1
TU187698 other upstream 86936 17410866 ~ 17411593 (+) True G127098
TU187390 other upstream 189371 17303820 ~ 17309158 (+) False LOC122322904
TU187389 other upstream 192555 17303820 ~ 17305974 (+) False LOC122322904
TU187377 other upstream 333772 17129922 ~ 17164757 (+) False LOC122362575
TU187881 other downstream 308157 17808674 ~ 17812167 (+) False G127239
XR_006253166.1 other downstream 383148 17883665 ~ 17887211 (+) True sdr42e1
TU187918 other downstream 422411 17922928 ~ 17928165 (+) True G127258
TU187919 other downstream 425583 17926100 ~ 17928165 (+) False G127258
TU187968 other downstream 638018 18138535 ~ 18140253 (+) True G127292

Expression Profile