RNA id: TCONS_00000080


Basic Information

Item Value
RNA id TCONS_00000080
length 3026
RNA type mRNA
GC content 0.55
exon number 9
gene id XLOC_000042
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 1941031 ~ 2000357 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtgtgtgtgtgagcatgagagagagtgtgtgagtgagtgagtgacgcTCCTCCAGTCTCTCGTAGGGAATCCCGCTCCACTTCCGTCATTCGGTTGTTAAACCTCCGCGAGCGCGCATCAATCACGGGACGGACGAGGCGGCCAGTCATCACACGTTCGCGCGCGAACCAGGCAAATCCTGACCTCATCACATCCGCGAGGGGCTCACAGGTGTATCCCGAACCGGTCGGTCTGTCCGCGGCTCGTTACCGGGAATACGGCGCGACATGGGAATGACACGAGTCCTGATCCTGCTGTACGCCGCTGTCGGTTTATGCAGCTGCCGGTCAGTTTCGGTGTCTGGGGGCCCTTTGCTCCGGGTGGAGGGCCAGCCACTGTCCATCCGCTGTGATGTGTCCGACTATGAGGGCCCCAGAGAGCAGGACTTTGAATGGACTGTAACACGAGAAACAAAAACCATCAACGTGATCTCCACATTCGATCCTGCATTCTCAGACCGCTCTCTACAGGACCGCATAAAGACCGGCGACATTAGCATAGCACGACTTGCGGACAATGTAGTGGAACTGAGGATTCAAGAGGCTCAAATTAGCGACAGCGCCACCTATCGATGCAGTACTCCAAGCACAGACTCGGTGATAAGCGGAAACTATGAAGCATCTGTTCAGCTGCAAGTTGTTCCCAACACTCTGATTGTGGCTCCAGATCCTCCGACGCCTGTAGTTCCCGAAGGCGGATCCATCAGGCTCCAGTGCAGCGTCTCGCGGAGCTTCATCCCGGGCATTTTTCTTTCCATAACCTGGTCAGTGAAGAACCGCTCTTCTCTCCTGGAGGACCTGCTGACGTTCGGCCCGGATATGAGCGTGACTGTGGACACCGTATCCTCTCAGCGCTACACAGATGGTGGGATGCGATTAGAGATGGGAAACGGAGTCTCGCACAGTCTGGTTCTCTCTGGAGTGACGCCGGCTGATCAGGGCCTGTATATGTGCACCGCCAGCCTGTGGACCAGAGAGCAGGGGATCTGGAGCCGCATTCAGGAGAAGAGCATGGAGATGGGGGACGTTACGGTCACACCTGCTGTGAACTCACTCGCGGTTCATGTTCAGAACGACTCCACATTATCCACTGGAGATTCGCTGGTGCTCTTGTGTTCGGTGATGGTGTCCGGTGCGTCTGCGGTGGATCTGGACGTGACGTGGCTGCAGAACGACACGCATGTTCTGGGACATCTGAGTCGAGACGGCGTTCAGactgacagcagcagcagagCAGTGGATGTAAAGCGTTTAGGAAAATGGGATTATCAGTTGAAGATTCAGGATGTGGAGACGTCTGATGGAGGATTGTATACATGCAAAGTGAATGTGTGGATTCAGCGTGACACTGGGCGATGGTATAAGGCTGCAGAGAAGATTTCTGACCCTGTTCGAGTCCATGTTATTAAGCACAaTCCGGAGTACACTGCTGTTCTGAGCTCCTCTGTGACTGCAAAGTTTTCCGGCGACCCAACTGAGTTGGAATGTAAAGTTATGAACGTGTCGAATCTGCGCAGCGGCAGACTGGGAGTGTCGTGGCTCTACAGAGATCTTCAGCCTAATGGTACTCCAGGTTCGACTCAAACCGTCGCTTCTTTGGATGAAAACGGGACTCTTGTTCCAGGTAGGGCGTTTAAGAGCCGTGTGGAGGCGGGGCTTATCACAGCCACCCGGGCGGAGCCTTCCATGTTTAAGCTCCGCCTCCTGCACACAACGGATGCAGATGCTGGTGAATATATGTGTGTAGTGAGCGCGTGGATCCCATCTCCACATGgacactggaaaaaggtggcAGAGCATCTGACACCGGCAGTTAAAGTCAGCTTCGCTAACAAGCGTCCTGTTCTGGGTGTGGTGGCTCGTCGTCTCCGTGAAGCCACAGCCGTGGGCTCCACATTTGAGATGAGCTGCCAGGCCAGTGTCCAGAACCTTCCGTCTGGATCCGCGTTCTCCATCTCTGTGCTGTCTGAGGAGTCCGTAGGAGCATCCGGCCGCAGACGGGCCTCGCTGGACCCTGACCTGCTCTTGAAGCTGGAGGATGTTGGCGAGCCGGCCCGGAGCCACAGCCTGATGCTGCTGAAGACAAAGAAGACGGAGTTTGAGTTTCGCATCCCGGCAGTTCGGCTGAGTGACCGCGGCTTTTACTACTGCGAGATGAAGGCCTGGACCAGGCAGATCGGGGACGAATGGGTGGAAGTGGCCAAAGGACTTTCCAATAAAGTCCAGATCGCCTTCACACACAaagGTCCCACGTTTGATGTGTCCATCAGCTCGGACGTGAGCAGTGTTTTCCCCTGGGAAACGGTGAAGATGGAGTGTGACGTCAGTGTTAGCGGCACGTCTCCATCCGCAGATGACGTGGCGTACGAGCTGAAGTGGTTTCTGAGTCGTCTGCGTGGCTCCAGCAGCCCGACTCTGTTAGCCAGCATGGACCGCTGGGGCGTCGTGCGTAAAAGTCCTCGCAACGATAGCAGCGACTGCAGCCTGGAGCGTCTGGAGGCCCGAAGATTCGCTCTGAGCGTCCACAACACGCAGGATTCAGACGCTGGAGACTATCACTGCAGCGTCACGCCGTGGGTCCGCTCGTCCGTCAATGGCGTCTGGAGCAGAGCAGCTGAAATCTCCTCACAGAGAGTCTTCCTCAACGTCAGGTTCGCATtgtgGTCCTCCATGAAGCTGCCACTGCTGTACGGCATCTGTGCTTCAGCAACTGTAGGTGTTGTTTCTCTCATCCTGGGCCTGGTCTGCGCTCACTGCTGCTGTAAAACCTCCACACCCGCTACTCCTCGCTCTCGCAAACTCATGGAGCTGGAGATGGATTGACAAAGACAGTACAGTTGTCCCCTTCCAGCCTGGAAGCCTTGGTGACAACTGACGAACGCTGGGACTCGTCCCGTGACAATATGCACCACCTGTATGGAGAAAcgtacggtggccgagagagattaacgtgctgcaatttaacaaaacacaaagcaaattAAGACA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-287 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PTGFRN (prostaglandin F2 receptor inhibitor).

Ensembl:

ensembl_id ENSDART00000110331

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000077 lncRNA upstream 41188 1898909 ~ 1899843 (+) True XLOC_000039
TCONS_00000073 lncRNA upstream 148508 1790772 ~ 1792523 (+) True XLOC_000036
TCONS_00000071 lncRNA upstream 209547 1730392 ~ 1731484 (+) False XLOC_000036
TCONS_00000065 lncRNA upstream 235151 1705130 ~ 1705880 (+) True XLOC_000035
TCONS_00000064 lncRNA upstream 250006 1690047 ~ 1691025 (+) False XLOC_000035
TCONS_00003015 lncRNA downstream 1359 2001716 ~ 2005632 (+) True XLOC_000043
TCONS_00002808 lncRNA downstream 23052 2023409 ~ 2023645 (+) True XLOC_000044
TCONS_00000101 lncRNA downstream 296234 2296591 ~ 2299546 (+) True XLOC_000048
TCONS_00003016 lncRNA downstream 1718309 3718666 ~ 3720603 (+) True XLOC_000053
TCONS_00000113 lncRNA downstream 2597703 4598060 ~ 4680477 (+) True XLOC_000056
TCONS_00000079 mRNA upstream 17778 1915967 ~ 1923253 (+) True XLOC_000041
TCONS_00000078 mRNA upstream 29650 1904419 ~ 1911381 (+) True XLOC_000040
TCONS_00000076 mRNA upstream 41183 1896737 ~ 1899848 (+) False XLOC_000039
TCONS_00000075 mRNA upstream 90927 1838164 ~ 1850104 (+) True XLOC_000038
TCONS_00000074 mRNA upstream 125371 1805294 ~ 1815660 (+) True XLOC_000037
TCONS_00000081 mRNA downstream 24728 2025085 ~ 2027100 (+) True XLOC_000045
TCONS_00000082 mRNA downstream 101184 2101541 ~ 2129631 (+) False XLOC_000046
TCONS_00000086 mRNA downstream 101184 2101541 ~ 2216362 (+) False XLOC_000046
TCONS_00000085 mRNA downstream 101184 2101541 ~ 2216362 (+) False XLOC_000046
TCONS_00000084 mRNA downstream 101184 2101541 ~ 2216362 (+) False XLOC_000046
TCONS_00000069 other upstream 147660 1718611 ~ 1793371 (+) False XLOC_000036
TCONS_00000070 other upstream 208705 1719207 ~ 1732326 (+) False XLOC_000036
TCONS_00000068 other upstream 217874 1717697 ~ 1723157 (+) False XLOC_000036
TCONS_00000067 other upstream 222504 1712153 ~ 1718527 (+) False XLOC_000036
TCONS_00000061 other upstream 365468 1575483 ~ 1575563 (+) True XLOC_000032
TCONS_00000094 other downstream 190343 2190700 ~ 2214397 (+) False XLOC_000046
TCONS_00000098 other downstream 271904 2272261 ~ 2288773 (+) False XLOC_000048
TCONS_00000099 other downstream 275248 2275605 ~ 2275742 (+) True XLOC_000049
TCONS_00000100 other downstream 286492 2286849 ~ 2299546 (+) False XLOC_000048
TCONS_00000102 other downstream 301601 2301958 ~ 2302623 (+) False XLOC_000050

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000299_00097393_00132755.mRNA True 2613 mRNA 0.53 8 CI01000299 97393 ~ 132755 (+)