RNA id: TU232239


Basic Information

Item Value
RNA id TU232239
length 1375
lncRNA type read_through
GC content 0.45
exon number 6
gene id kctd6b
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11697414 ~ 11746570 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttaaacttttttttttttttttttttttttttttttttttttttgcagTCTGAAAATCAAATGGACTTTATTTGTGATCACTGAAGCCTTGGTTCACACAGATGAATAAGTGCGAGTGCTTAGTTGGCGTGCAGGGCCTTCCAGCGGCTCAGGGGTCCACGACTGGGAATGTACTTCACCCCACAGCCATCAGGGATCACACGCTTCTCTGCCAGCATGTCATCAAAGTCACAGGCATTGAATTTCGTGAATCCATACTTCTTGGAGATGTggatctaaaaaataaataaaaacaaataagccaCTTTTCACATGATCTCATCAAGATACTTTTAACGTTGTGTTACGTACCTTCTGACGGCCAGGGAACTTGAACTTAGCTCTCCTCAGAGCCTCGATCACATGTTCCTTGTTCTGAGCCTTTGTGCGCACGGACATGATCACCTGGCCAATGTGCACACGAGCCACTGTGCCCTGAGGCTTACCAAAAGCACCGCGCATACCGCACAGGATAACATTTTGTTGATGCGGATAACATGGAAAGGGTGCAGGCGCACACGGATGTGGAAACCATCTTTACCGCAGGTCTTCACCATGTACTTGTTGGCGCAGATACGGGCAGCCTCAAGAGCTAGAACACAATTCACAGATTAGAGGGAGAAAAGAAATCAGAATGTGATAATACTGAGGTATTAGATGAACAGATGCTTCACCTTCACTGGACAGCTGCTCATATTCATCAGATACCATGTGAGCACACAGGGGGAACTCATCCACCTTAGCCTTCTTCCTGCCCAAGTCGAAGCTCGACAGAAACGGGACTTCGGGTAAGGCTTGTTCTTACAGTATCTGTAGCTGCAAGAAACTGACAGTTAGCAAGACTCAAAGTCTAAAACAtaaacagttattaaaaaacCTGGTGTACACAAGGCTGAACCCTCTAAATATAACCTCTGTTAAGATTGAAATTGCTACATAACTACAACGGCTACAAAAGGCTAAGTGTCAAGTGTTTAACCGGCGCTAATGTGTGGATTTTACATTTCAAGTGGGCAAGAGTTTTATAATTCACTTTATTAGGGACCAAAATTGCCTTTGAGCAGACACTCGTGTTAAACACAGAAAGCAGCGTTGAGCTCGGTACGGTCAGGGCTGTATGAGGCCGGGGAGCCGCACATGGTTAGCGGGCCTGCCATTTTCACTACGGCTAGTTCGTAAAACACCAAATTCGCGACTTACCAACGGGCTGGACGGCGGCCCATGGTTGCAACCTGTAATAGACACAATAACAACGACTTAAAAGACGGAAACGTGTATTCGTAAGTgcgtaaacaaataaattttcGACAAATCTCGAGAGCGACGGAGCGCGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232067 lncRNA upstream 60391 11655795 ~ 11656380 (+) True G156701
TU232066 lncRNA upstream 61455 11654916 ~ 11655316 (+) True G156700
TU232065 lncRNA upstream 62154 11654255 ~ 11654617 (+) True G156699
TU232064 lncRNA upstream 62611 11653380 ~ 11654160 (+) True G156698
TU232052 lncRNA upstream 65664 11614130 ~ 11651107 (+) True G156690
TU232244 lncRNA downstream 17137 11763707 ~ 11822844 (+) True G156823
TU232272 lncRNA downstream 81171 11827741 ~ 11926375 (+) True G156843
TU232268 lncRNA downstream 158320 11904890 ~ 11925798 (+) False G156843
TU232326 lncRNA downstream 200114 11946684 ~ 11972922 (+) True G156881
XR_006247800.1 lncRNA downstream 283576 12030146 ~ 12037888 (+) True LOC122328486
XM_043225498.1 mRNA upstream 12381 11695816 ~ 11704390 (+) True slmapb
XM_043225499.1 mRNA upstream 12381 11695816 ~ 11704390 (+) False slmapb
XM_043224116.1 mRNA upstream 23280 11685712 ~ 11693491 (+) True atp6ap1lb
XM_043224284.1 mRNA upstream 78748 11634276 ~ 11638023 (+) True LOC122328536
XM_043224287.1 mRNA downstream 15859 11762429 ~ 11794733 (+) True flna
XM_043225315.1 mRNA downstream 49924 11796494 ~ 11799916 (+) True emd
XM_043224346.1 mRNA downstream 120148 11866718 ~ 11868437 (+) True cfap126
XM_043224774.1 mRNA downstream 176314 11922884 ~ 11924595 (+) True tnnc1b
XM_043225157.1 mRNA downstream 302191 12048761 ~ 12060362 (+) False tnnc2.1
unassigned_transcript_2622 other upstream 198235 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 200900 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 202925 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2618 other upstream 204073 11512625 ~ 11512698 (+) True trnan-guu_35
TU231904 other upstream 539738 11174421 ~ 11177033 (+) True G156586
XR_006247901.1 other downstream 2307794 14054364 ~ 14054500 (+) True LOC122329331
XR_006247900.1 other downstream 2310115 14056685 ~ 14056821 (+) True LOC122329330
XR_006247782.1 other downstream 2553131 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 2937420 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 2965577 14712147 ~ 14714533 (+) True LOC122328914

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00044006 False 728 lncRNA 0.47 2 NC_007134.7 19712560 ~ 19713530 (-)