RNA id: TU232866


Basic Information

Item Value
RNA id TU232866
length 278
lncRNA type read_through
GC content 0.29
exon number 2
gene id G157265
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 12729044 ~ 12787715 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaaacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatactctcactctcactgtctctgtctctcttcttatcccccttgtttattccttcccttctggcatgtactaatttgaacactccctgtgactgggtgttataagcacttacactgtctgtttgtctctctaaaaaaatgaatcgctgttgtactctcaattgtaagtcgctttggataaaagcgtctgcaaaatgactaaa

Function

GO: NA

KEGG:

id description
ko00310 Lysine degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232617 lncRNA upstream 342663 12353090 ~ 12386381 (+) False G157084
TU232620 lncRNA upstream 342663 12361473 ~ 12386381 (+) True G157084
TU232621 lncRNA upstream 342663 12361695 ~ 12386381 (+) False G157084
TU232604 lncRNA upstream 477066 12246217 ~ 12251978 (+) False LOC122328708
TU232614 lncRNA upstream 482943 12245874 ~ 12246101 (+) True G157081
TU232925 lncRNA downstream 65526 12853241 ~ 12853832 (+) True G157294
TU232954 lncRNA downstream 202086 12989801 ~ 13040412 (+) True G157317
TU232968 lncRNA downstream 318745 13106460 ~ 13106957 (+) True G157326
TU232971 lncRNA downstream 327243 13114958 ~ 13115174 (+) True G157329
TU233085 lncRNA downstream 623955 13411670 ~ 13494477 (+) False G157408
XM_043224141.1 mRNA upstream 108975 12613329 ~ 12620069 (+) False dhrs3a
XM_043224140.1 mRNA upstream 108975 12613379 ~ 12620069 (+) True dhrs3a
XM_043224142.1 mRNA upstream 116683 12602134 ~ 12612361 (+) True igsf21b
XM_043225393.1 mRNA upstream 128577 12563367 ~ 12600467 (+) True arhgef10lb
XM_043225394.1 mRNA upstream 128577 12563368 ~ 12600467 (+) False arhgef10lb
XM_043225480.1 mRNA downstream 156543 12944258 ~ 12953015 (+) True LOC122329270
XM_043225042.1 mRNA downstream 174580 12962295 ~ 13037553 (+) True rap1gapa
XM_043225044.1 mRNA downstream 174580 12962295 ~ 13037553 (+) False rap1gapa
XM_043225047.1 mRNA downstream 174581 12962296 ~ 13037553 (+) False rap1gapa
XM_043225048.1 mRNA downstream 192635 12980350 ~ 13034777 (+) False rap1gapa
unassigned_transcript_2622 other upstream 1210508 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 1213173 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 1215198 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2618 other upstream 1216346 11512625 ~ 11512698 (+) True trnan-guu_35
TU231904 other upstream 1552011 11174421 ~ 11177033 (+) True G156586
XR_006247901.1 other downstream 1266649 14054364 ~ 14054500 (+) True LOC122329331
XR_006247900.1 other downstream 1268970 14056685 ~ 14056821 (+) True LOC122329330
XR_006247782.1 other downstream 1511986 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 1896275 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 1924432 14712147 ~ 14714533 (+) True LOC122328914

Expression Profile