RNA id: TU234890


Basic Information

Item Value
RNA id TU234890
length 1573
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G158605
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 17289971 ~ 17291543 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTGTATGACAAGGAAATGAAGACTTGAGATTATATATTGCGATTTTGACTTGGCCTTTTTAGTTTATCTCACTAGGACACAGTTTTAACCCTAAAGTTAACAGCGCACCTCATTTTTTACGTCCAAACCCTCATTTAAACCCTGTGAAGACCATGTTTCTTGCCTTTGTATCCTTACTGTTCTTTCCTGTTTCATGTTTATAGTCCATCCCTCTCTCATCCCTCTTGTTTTTAGAATATGAATAATGTTGAAGAATATATGAATTTTACTTAGATGCTTTGTTGAAGCCGTTTTATTTCACTTCAGTTTAATGTTAAAAGACAAAGTAATAATTTGAAtggttacataaaaaaaggtgTCTTCAAACATGAGTTATGTGATGttgctaaataatttaaacataagGAACCCAAgaaatttgtcattttgcagTATGTcggtatgtatgtgtgtgagtgtttgcaCGTGTGCCAGAAGGATTCATGCCGATTTGTCAGACGAACCAATGTTTGTGACTGCAGTATGGGGTCATTATATTTCAAAAGGTGctcttattttagtttttacatattcatattaacACTATATCTAGAGTCtatgtagagagagagagagagagagaaaagaaatgttaaaaattcacagttgtttgtaaatgcaaatgttgctGTTATCTCTCTGCTTAAAGTTTACTCATCCTTACATACCCTTTAGTCTTGAGTAGAGATGCTTCATTATGTGATTACATTAGGCAAAACGGAGCATGTGAGGCTAATCATGAATTTGTTAGCATGGTTGCGCCCCCATATGACTTAGCATTGTAAAGCTCCATGCATTAAGTTTGATTCAGACCTAAATCTGCAATAATTGAGTGTTTTGCAAAAGACCAATCAAACAAGAAggattttggtttttttatactgttactgtttaaaaaaaagtttttatttgttctttattttttgcctcATTGTATGTTAGCATGTCTCTTTGTCTCAGTTTACTGAACGATCTTGATGTATTGGCTATGTTTggtttatgtcttttttttgtgatgaacATGTGGAAAAACATGCCACCTCCACACATTCCTGCACTCAAGCTAGTTTTGTCTGTAGCAGTGTCTGAACTAATCTGATGTATCTTTAAAATGGTCTAAGGGCCTGCTATTGACCAAAACATGGAAGAGAGTCAGTCTTGTTTGTTGTTCATTGTTTTGATGTATGGACATCCACCAGTCCAGTGGTCTAAAAACTATTGGCTTTAAAAGGAGACCTGAATGTCGCACATGCTAATGTACTTGTAGCTGAAACGCTAAGTATCTTTTAGTCagatatatttttggttttcatgTCACCTCCTTTTAAGTACTCAGATTTGAGACCACTACAGTAACTGAAAACCAACTTACATTATGattgtatgtgtttatgtttgtgtgtgtgtgtgtgtgtgagttagagGCGCTTTATTAATAAGGCTGAATGGAGAATTCTACGCTGTACGTGTGACTTATGCTAACTGTTGCCTACAGAGGAGACAAAACATACAaagttttatatgaaaatgtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234874 lncRNA downstream 64402 17152825 ~ 17225569 (-) True G158591
TU234861 lncRNA downstream 207287 17082207 ~ 17082684 (-) True G158587
TU234860 lncRNA downstream 207419 17082207 ~ 17082552 (-) False G158587
TU234706 lncRNA downstream 561628 16728101 ~ 16728343 (-) True G158484
TU234705 lncRNA downstream 562256 16727438 ~ 16727715 (-) True G158483
TU234898 lncRNA upstream 19785 17311328 ~ 17338919 (-) False G158608
TU234897 lncRNA upstream 42301 17333844 ~ 17335245 (-) True G158608
TU234920 lncRNA upstream 91799 17383342 ~ 17386554 (-) True G158628
TU234925 lncRNA upstream 102478 17394021 ~ 17395422 (-) True G158632
TU234910 lncRNA upstream 122160 17413703 ~ 17422305 (-) False coq10a
XM_043225102.1 mRNA downstream 31807 17214599 ~ 17258164 (-) True itga5
XM_043225101.1 mRNA downstream 105586 17176625 ~ 17184385 (-) False slc48a1a
XM_043225100.1 mRNA downstream 110139 17176625 ~ 17179832 (-) True slc48a1a
XM_043225098.1 mRNA downstream 113482 17171113 ~ 17176489 (-) True hrct1
XM_043225099.1 mRNA downstream 114392 17171113 ~ 17175579 (-) False hrct1
XM_043223974.1 mRNA upstream 2635 17294178 ~ 17302565 (-) True csrnp2
XM_043225140.1 mRNA upstream 11668 17303211 ~ 17315390 (-) False tfcp2
XM_043225139.1 mRNA upstream 11668 17303211 ~ 17315390 (-) True tfcp2
XM_043225290.1 mRNA upstream 25085 17316628 ~ 17330887 (-) False pou6f1
XM_043225289.1 mRNA upstream 25085 17316628 ~ 17330887 (-) True pou6f1
TU234864 other downstream 110192 17176652 ~ 17179779 (-) False slc48a1a
TU234495 other downstream 931266 16357652 ~ 16358705 (-) False G158336
TU234490 other downstream 1046576 16240810 ~ 16243395 (-) True tac3a
TU234433 other downstream 1120137 16143833 ~ 16169834 (-) True G158288
TU234366 other downstream 1281056 16008106 ~ 16008915 (-) True G158231
TU234899 other upstream 47724 17339267 ~ 17343385 (-) True G158609
TU235255 other upstream 754395 18045938 ~ 18047878 (-) False march9
XR_006247822.1 other upstream 940100 18231643 ~ 18235536 (-) False hnrnpa1b
TU235534 other upstream 1455848 18747391 ~ 18754712 (-) True G159076

Expression Profile