RNA id: TU235504


Basic Information

Item Value
RNA id TU235504
length 1801
lncRNA type sense_over
GC content 0.35
exon number 2
gene id G159054
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18664402 ~ 18731816 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATATCGATACACAACCTTGGCAGGAATGTTTTACATGGTAGCACTTTGGCACAAGCAGCTGTTTACTATAGCTGTCTTTACTATGAAACAAATATCATTCAAATCTACAGTTCAGCAACAGTTAGAACATTTCGGATAGagcactgtatatataaatatggagAAAACTGTATTCAACGTGAAAGTATCTGAGAAATATTTGATCACAGCAACAAGGGTTGTGACGGAAATACAGCCATAAATTGTGGTGAGATGCAATAATGCATGTCAAATGTTATTGcactatttattatgtacagcAGAATGAAAGAATGGGAAAATTAAAGAATGTTCCAATCTCGGCAAACATTCAATGAGTCTACAAtcatttttggaaataaattCAACATGGCAGTGTACACAAGAGTTGAACCCCATGGAAAAATGTCAAGAAATGTCCAGGTCATGTGTCATCCCGAATTCAAAAGGGGGCACggttattcttattttttcaaactttacattattttcattatttttacggCAGTTaatatcttttacattttaatatcagtaCTGCAAAAAAGACAAACTATTTAAATTAGCTATGCACTAATGTTGACTATGATTTctactattaaaatgtaatcattttcatttgccCAATAACCGATAAACCGATATTGATACTAATATTCTATAATActttgtctaaataaattaaaaataaagcacttaataaaaataaagtattttaaatgctacaagtGAATTTAGGCATCACAACATTGCAAACAactataatgtacagtatgaaaaatagatatttattcTGATATTTGCTGAAGACATTTAACAGAAAGATTAGTGTTTAAATTAGTACTTTAGATGAGCACTATCAAAtccaaaaataatcaaaaacaggATGTACAATCAAATATCCAGCATTAACCTATAATAAGGTACCAATATACAATACAGTGCATACctaatttaaattgcaaaacatatttttaaagtgcaaaTATATGTGGCTGCATTCAGTGTATTACACTTAtgctgactttttaaaaaatatataattgggTCTGGACAGTTTACAGTATTGAGAGCGTGTGGAAGGGagtaattttgttgtaaaatgtcaCAATGTGGTCTATCTTAATGCATCTCAATGGTccttttttgattttgaagGGTAAAGTATGACCTAGACGTTTCTCCATGAGATTCACCTGTAAAATCCTCCTCTTTTTCAGTCGTTCTGCTGATCACCTGATTTATCTTTGTCACGCCAAACGTCTGCCTACTTCCTGTGCCCATTAACCTCTGCTGATTACACTCTGGATATTTCTTCCCTCAATCTTCCTCTCTCTGGTTGAATTGCACTGATTGGCACCTCTGTTTCTGCAGGTAATTAGCTGCATCCACTCGAGGTGTGCGGAAGACTCCGGGTGCGTCGGTGTTCCCGCACAGGCATCTGTTTTTCTGCCACACGCAGCTACTTATTAGCTCCTTTCAAAATCGGGCgcaaattagaaaatatttacacactcGAAAGCGTGCCGGCGCAACTGATTCAGCCagtgagaaaatgaaaaaatatcttGGCCTAAGAAACTACGTGAAATATAAAGATGATGGTGCTAAAGGTGACCTGTGCATGCGTGGTTGGGTATTACAGCGTACAGCACAGCCTGCGCAAGCTCTCTGCCGGAGTCTCGTGTTCCTGGGGAAATTTCAGCATTAGAAATGTCCAGATGATATTTCGACACAAAACCAAATGTGATATAATAAAGGCAGTCTAAAGTATaagctttct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235500 lncRNA downstream 15777 18648087 ~ 18648625 (-) True G159052
TU235490 lncRNA downstream 19714 18642262 ~ 18644688 (-) True G159048
TU235489 lncRNA downstream 19818 18642262 ~ 18644584 (-) False G159048
TU235492 lncRNA downstream 20328 18642262 ~ 18644074 (-) False G159048
XR_006247881.1 lncRNA downstream 49257 18613676 ~ 18615145 (-) True LOC122329081
TU235539 lncRNA upstream 31917 18763733 ~ 18763933 (-) True G159079
XR_006247783.1 lncRNA upstream 213234 18945050 ~ 18983664 (-) True LOC122328331
XM_043225284.1 mRNA downstream 26904 18624388 ~ 18637498 (-) True acp1
XM_043225285.1 mRNA downstream 26904 18624388 ~ 18637498 (-) False acp1
XM_043224447.1 mRNA downstream 71548 18585124 ~ 18592854 (-) False ccnt1
XM_043224446.1 mRNA downstream 71548 18585124 ~ 18592854 (-) True ccnt1
XM_043224448.1 mRNA downstream 80370 18579092 ~ 18584032 (-) True pmelb
XM_043224665.1 mRNA upstream 82941 18814757 ~ 18829293 (-) True si:ch211-236h17.3
XM_043224322.1 mRNA upstream 254136 18985952 ~ 19059410 (-) True LOC122328577
XR_006247822.1 other downstream 428866 18231643 ~ 18235536 (-) False hnrnpa1b
TU235255 other downstream 616524 18045938 ~ 18047878 (-) False march9
TU234899 other downstream 1321017 17339267 ~ 17343385 (-) True G158609
TU234864 other downstream 1484623 17176652 ~ 17179779 (-) False slc48a1a
TU234495 other downstream 2305697 16357652 ~ 16358705 (-) False G158336
TU235534 other upstream 15575 18747391 ~ 18754712 (-) True G159076

Expression Profile